Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RW078_RS17170 Genome accession   NZ_CP136178
Coordinates   3648010..3648336 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain ABO21-A045     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3643010..3653336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW078_RS17150 (RW078_17150) - 3643111..3643740 (-) 630 WP_162281029.1 FHA domain-containing protein -
  RW078_RS17155 (RW078_17155) gspD 3643781..3646057 (-) 2277 WP_001196440.1 type II secretion system secretin GspD -
  RW078_RS17160 (RW078_17160) - 3646099..3646935 (-) 837 WP_000870031.1 type II secretion system protein N -
  RW078_RS17165 (RW078_17165) gspN 3646935..3647678 (-) 744 WP_000730343.1 type II secretion system protein N -
  RW078_RS17170 (RW078_17170) hns 3648010..3648336 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  RW078_RS17175 (RW078_17175) - 3648531..3648971 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  RW078_RS17180 (RW078_17180) - 3648979..3650172 (-) 1194 WP_031379407.1 hypothetical protein -
  RW078_RS17185 (RW078_17185) - 3650182..3651021 (-) 840 WP_001230201.1 hypothetical protein -
  RW078_RS17190 (RW078_17190) - 3651030..3651797 (-) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  RW078_RS17195 (RW078_17195) hemC 3651802..3652719 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=889437 RW078_RS17170 WP_000801427.1 3648010..3648336(-) (hns) [Acinetobacter baumannii strain ABO21-A045]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=889437 RW078_RS17170 WP_000801427.1 3648010..3648336(-) (hns) [Acinetobacter baumannii strain ABO21-A045]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGCCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1