Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   RWV42_RS16665 Genome accession   NZ_CP136173
Coordinates   3517666..3519894 (+) Length   742 a.a.
NCBI ID   WP_114189679.1    Uniprot ID   A0A335F759
Organism   Acinetobacter baumannii strain ABO21-A049     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3512666..3524894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWV42_RS16640 (RWV42_16640) lnt 3513053..3514612 (+) 1560 WP_114189678.1 apolipoprotein N-acyltransferase -
  RWV42_RS16645 (RWV42_16645) - 3514614..3514952 (-) 339 WP_000434938.1 tRNA-binding protein -
  RWV42_RS16650 (RWV42_16650) - 3515096..3515440 (-) 345 WP_000643174.1 hypothetical protein -
  RWV42_RS16655 (RWV42_16655) gspG 3515707..3516288 (-) 582 WP_000865307.1 type II secretion system major pseudopilin GspG -
  RWV42_RS16660 (RWV42_16660) gspF 3516312..3517517 (-) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  RWV42_RS16665 (RWV42_16665) priA 3517666..3519894 (+) 2229 WP_114189679.1 primosomal protein N' Machinery gene
  RWV42_RS16670 (RWV42_16670) - 3519971..3521812 (+) 1842 WP_114189680.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  RWV42_RS16675 (RWV42_16675) - 3521978..3522853 (+) 876 WP_001281765.1 Hsp33 family molecular chaperone HslO -
  RWV42_RS16680 (RWV42_16680) - 3522991..3523602 (+) 612 WP_114189681.1 LysE family translocator -
  RWV42_RS16685 (RWV42_16685) - 3523753..3524709 (+) 957 WP_001107916.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83911.75 Da        Isoelectric Point: 8.5662

>NTDB_id=889391 RWV42_RS16665 WP_114189679.1 3517666..3519894(+) (priA) [Acinetobacter baumannii strain ABO21-A049]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGHFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQIRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=889391 RWV42_RS16665 WP_114189679.1 3517666..3519894(+) (priA) [Acinetobacter baumannii strain ABO21-A049]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTCACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCAATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGCCGAAGCATTATTAAAACGCTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTACAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGCCCAGCCCCTGTACAATTGGCGCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAGGCCACTCAGCACGTCCTTAATGCACAGCATCAATATCAAGCCTTTTTATTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTACCTGCACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTTCCCGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCGGGGTTAAATGACTCTA
AACGCCTACAAGCCTGGCAACAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTTATCATTTTAGATGAAGAACATGACCTTTCTTATAAACAACAAGAAGGTTTCCGTTACCATGC
GCGTGATGTCGCGCTTTATCGAGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACTCCAAGCATTGACAGTT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAGCGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATTTTCTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCTCATTGTGATGCACATTTTACGTTGCACACTCAGCCCTACTCTTACTTACATTGTCACCACTGTGGCACCGTT
CATCGCCTGCCAGACCACTGCCCTGAATGTCAGCAAAAGAGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTCCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAACAAAATAAACCTTCGATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCTTGGTTGCTATTTTAGACATCGATGCAGGTTTATTGAGTGTCGATATTCGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAGGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCAGTCGCGAAACAAACATTGGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGCTATGCCGTACTTATACGCGCTGAATCGAAAGATCGTGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGACATTGTTGATATCTGGGGGCCAATTCCAGCGCCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTCCATGCGCCTAGACAGCATCAAATCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A335F759

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.978

100

0.98