Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   RWV42_RS10000 Genome accession   NZ_CP136173
Coordinates   2119666..2120046 (-) Length   126 a.a.
NCBI ID   WP_114189855.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A049     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2114666..2125046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWV42_RS09970 (RWV42_09970) tadA 2114785..2115288 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  RWV42_RS09975 (RWV42_09975) - 2115295..2116419 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  RWV42_RS09980 (RWV42_09980) ung 2116416..2117129 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  RWV42_RS09985 (RWV42_09985) - 2117180..2117776 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  RWV42_RS09990 (RWV42_09990) gspK 2118006..2118965 (-) 960 WP_000301460.1 type II secretion system minor pseudopilin GspK -
  RWV42_RS09995 (RWV42_09995) xcpW 2118965..2119666 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  RWV42_RS10000 (RWV42_10000) xcpV 2119666..2120046 (-) 381 WP_114189855.1 type II secretion system minor pseudopilin GspI Machinery gene
  RWV42_RS10005 (RWV42_10005) - 2120036..2120590 (-) 555 WP_000841372.1 type II secretion system protein -
  RWV42_RS10010 (RWV42_10010) - 2120600..2121208 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  RWV42_RS10015 (RWV42_10015) - 2121246..2122019 (-) 774 WP_000497301.1 TatD family hydrolase -
  RWV42_RS10020 (RWV42_10020) - 2122037..2122378 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  RWV42_RS10025 (RWV42_10025) - 2122390..2123370 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  RWV42_RS10030 (RWV42_10030) kdsB 2123382..2124143 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14035.30 Da        Isoelectric Point: 9.8004

>NTDB_id=889379 RWV42_RS10000 WP_114189855.1 2119666..2120046(-) (xcpV) [Acinetobacter baumannii strain ABO21-A049]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQFTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=889379 RWV42_RS10000 WP_114189855.1 2119666..2120046(-) (xcpV) [Acinetobacter baumannii strain ABO21-A049]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATTTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992