Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RWU60_RS17145 Genome accession   NZ_CP136172
Coordinates   3677322..3678890 (+) Length   522 a.a.
NCBI ID   WP_025467590.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3672322..3683890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS17125 (RWU60_17125) - 3672812..3674113 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  RWU60_RS17130 (RWU60_17130) thrC 3674169..3675308 (+) 1140 WP_000063593.1 threonine synthase -
  RWU60_RS17135 (RWU60_17135) pbpG 3675417..3676463 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  RWU60_RS17140 (RWU60_17140) - 3676676..3677311 (+) 636 WP_000633799.1 response regulator -
  RWU60_RS17145 (RWU60_17145) pilS 3677322..3678890 (+) 1569 WP_025467590.1 sensor histidine kinase Regulator
  RWU60_RS17150 (RWU60_17150) pilR 3678915..3680336 (+) 1422 WP_162277824.1 sigma-54-dependent transcriptional regulator Regulator
  RWU60_RS17155 (RWU60_17155) - 3680340..3681524 (-) 1185 WP_000939102.1 S41 family peptidase -
  RWU60_RS17160 (RWU60_17160) gpmI 3681540..3683087 (-) 1548 WP_031963978.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59212.79 Da        Isoelectric Point: 6.7323

>NTDB_id=889350 RWU60_RS17145 WP_025467590.1 3677322..3678890(+) (pilS) [Acinetobacter baumannii strain ABO21-A051]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQTDNSLQQPALYSYTLLGYSLLSLVQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYNIVVSNPAACSLLGIPPQFANE
KYPLAKWHTDLFEILKFGDLKEGDRFIFESRLSAYSINIKVQHLLVPQQTLTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDVKHFIVTLLEEDLFDVK
HSIQLKISDSSLKFLFDEKQLRQVMINLVRNALRHNAPDSPYITINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=889350 RWU60_RS17145 WP_025467590.1 3677322..3678890(+) (pilS) [Acinetobacter baumannii strain ABO21-A051]
ATGCAATTTCCCTTAAATTCATCCTTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGCTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCGCAAACTGATAACAGTTTGCAGCAACCTGCCTTATATTCCT
ACACACTACTCGGCTATTCGCTCTTAAGTCTTGTTCAGCTGTTATGCTTTAAATTTATTGCCACTCAAGCCACGCGACAG
CTTATTTTATTTTTTATTGTTGATATTATTTGTTTGAGTTTACTGACTTTTTCTGTGGGTGAACCAAATTTACAACTCAG
CTTACTCTATGTAATTGCCATCTTTACCTCGGCGATTTTACTCAGCGCAAGAATGTCTTTGCTGATTACATTGCTTGCGG
TTATCGCTGTTATTTACCAACGATTTGTAGGTAGTCTATTTGACTATAACAATCTAAATACTATTGGTAATAGCGCTCTC
TTAGCTTTCTTATTTTTTGTGGTTCATGGAATTGGCCAAATTGCAGTGCAGCGCTTTAAATTACTTGAAGCACTCACCTT
TCACCAGTCAATTGAACTCTATCAACTCCAAAATATTAACCGTTATATCTTAGAACAAATTGAAGAAGGCTATTTAGTTT
TAGATGAGAATTACAACATCGTTGTCAGTAATCCTGCGGCCTGTTCACTCTTGGGTATTCCCCCTCAATTTGCCAATGAA
AAATATCCTTTAGCGAAGTGGCATACCGATTTATTTGAAATTTTAAAGTTTGGTGACTTAAAAGAAGGTGACCGATTCAT
TTTTGAGTCTCGGCTATCGGCATACTCCATCAACATTAAAGTGCAACACCTTTTGGTCCCACAACAAACGTTAACCCTGC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCCCAGCAGCTTAAGCTTGCTGCTCTAGGACAGCTCTCAGCAAGT
ATTGCACATGAGATCCGCAACCCTCTCGCTGCAATCGTACAAGCAAATGAGTTACTGAAAGATAGTGATCCAGAACAACA
AAATACTTTGCGTCATATGATTGGCAAACAAACCAAACGCATTGATAGTATTGTTCAAGATACTTTAGGGCTTGCTCGTA
GCGAAAGAACACATCCTATCCAGATCGATGTAAAACACTTCATAGTCACATTGCTCGAAGAAGATTTATTTGACGTTAAA
CATTCAATTCAACTTAAAATTTCGGATAGTTCTCTAAAATTTTTATTTGATGAAAAACAATTAAGACAAGTCATGATCAA
TCTGGTGAGAAATGCTTTACGGCATAATGCCCCCGACTCACCGTACATTACGATCAACATTCATTCACAGACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCGAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

99.234

100

0.992