Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   RWU60_RS02365 Genome accession   NZ_CP136172
Coordinates   484319..485203 (+) Length   294 a.a.
NCBI ID   WP_029424144.1    Uniprot ID   A0AAX0TX93
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 479319..490203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS02340 (RWU60_02340) - 479717..480964 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  RWU60_RS02345 (RWU60_02345) wrbA 481252..481845 (+) 594 WP_213067599.1 NAD(P)H:quinone oxidoreductase -
  RWU60_RS02350 (RWU60_02350) - 481898..482473 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  RWU60_RS02355 (RWU60_02355) - 482546..483259 (-) 714 WP_000201544.1 DUF3108 domain-containing protein -
  RWU60_RS02360 (RWU60_02360) - 483417..484088 (-) 672 WP_001193955.1 hypothetical protein -
  RWU60_RS02365 (RWU60_02365) tonB2 484319..485203 (+) 885 WP_029424144.1 energy transducer TonB Machinery gene
  RWU60_RS02370 (RWU60_02370) ybeY 485293..485769 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  RWU60_RS02375 (RWU60_02375) - 485779..486867 (-) 1089 WP_000122983.1 PhoH family protein -
  RWU60_RS02380 (RWU60_02380) miaB 486905..488356 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33545.40 Da        Isoelectric Point: 9.0947

>NTDB_id=889325 RWU60_RS02365 WP_029424144.1 484319..485203(+) (tonB2) [Acinetobacter baumannii strain ABO21-A051]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIHPTEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=889325 RWU60_RS02365 WP_029424144.1 484319..485203(+) (tonB2) [Acinetobacter baumannii strain ABO21-A051]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCATCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCATCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGCCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993