Detailed information NTG0088924

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OCU46_RS02595
• Genome accession: NZ_AP024866
• Coordinates: 540079..543477 (-)
• Length: 1132 a.a.
• NCBI ID: WP_141269715.1
• Uniprot ID: A0A4Y3IL13
• Organism: Vibrio comitans strain LMG 23416
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 535079..548477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU46_RS02580	-	535641..536669 (-)	1029	WP_141269721.1	ABC transporter permease	-
OCU46_RS02585	-	536671..537657 (-)	987	WP_141269719.1	ABC transporter permease	-
OCU46_RS02590	-	537808..539481 (-)	1674	WP_141269717.1	ABC transporter substrate-binding protein	-
OCU46_RS02595	chiS	540079..543477 (-)	3399	WP_141269715.1	response regulator	Regulator
OCU46_RS02600	rsmC	543585..544604 (-)	1020	WP_141269713.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
OCU46_RS02605	-	544618..545703 (-)	1086	WP_141269711.1	AI-2E family transporter	-
OCU46_RS02610	hemL	545820..547106 (-)	1287	WP_141269709.1	glutamate-1-semialdehyde 2,1-aminomutase	-
OCU46_RS02615	erpA	547305..547646 (+)	342	WP_017028370.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1132 a.a.
• Molecular weight: 128104.73 Da
• Isoelectric Point: 4.8239

>NTDB_id=88924 OCU46_RS02595 WP_141269715.1 540079..543477(-) (chiS) [Vibrio comitans strain LMG 23416]
MSKSHARPKFKRLQSTLMGAFMLVSLIPMLLVAFFFLRSHTQDLQEQSTTYLTSMRDGNANKVSAYIGNLDSEVIGFVHS
ELAYASGGRFYGLIDSFRRLGKDLEESRSIGQQRYIPGSGDAIRTKTVRGNDNYTSVERYRLLHKRYHSTFQSLLERSDF
DDIALVDLEGNVAYSVHKYDYYATNLNSGRYKQTELGDLFKQLKDYVATNKDSLEQYNDIVLMSDFSIEGNSSSTEEVAW
FAAPIVQRGYLHSYAFFRLPLSALTDLITEEHLVNLNVSLFDKSLKLLASSSDDVDAKQSSPVAIKALEGSAEVETYTNL
SDDNTIAAYAPIDVHGLTWAVVVETPEEVAFERVNQLFKLFFIIVLSAAIVVVVASHYLSNFITTPLLKLTWAAERISAG
DLKENVEGTKRKDEIGRLAVSFERMQRSIREKIELIKEQNKELEFNLDTIATQNGELQLADKLKDEFLATTSHELRTPLH
GMIGVAQAMLSEAHGSVPPSQRYQLEIIINSGHRLSNLVDDLLDYHKMQYGHLQLEPTAVSLSSASQLVVELSKHLVDKK
PVRIINQIDSSLPMVSADPQRLEQVLYNLVGNAIKFTSEGKVILNAEQQGEQLRIQVIDTGHGIPKEDLDNIFEPLTQSN
SSGYHQGTGLGLSISKRLIEIMRGELTVTSQPMLGTTFTMTLPLASKQELDAFNSESETEHYSREEFHQTEFDEQSLSLP
KNPDGKLVMIADDEPVNLKILESFLRVEGYRVVSAHNGREVLDLIAEEKPDILLLDIMMPELSGFQVCEYLRNLYNYNEL
PIIMLTALNQTEDKVKGFDCGANDYLVKPFNKQELSARIQVHINASLSERRKQENDSLSAELTQRERVESLLLETQTKLL
EQLESTPEAIVCINENHKITFANKSATELLKRSIEQIKRSQIEEFIAPKHLQFDQPHRSMDIDVFVDETKQVIASDIFTL
PLETGLRGMIIFNSDPDDANQRINNLEVALDALASYAFAGDKSQLEELKELGDEFADLVEQLDNSKDNKQQNMRQLLVDC
MSSALEYWESHDGNTKFNFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDFILAHSNHDDAQRAQLA
DLREQLQSLVTQ

Nucleotide

• Length: 3399 bp

>NTDB_id=88924 OCU46_RS02595 WP_141269715.1 540079..543477(-) (chiS) [Vibrio comitans strain LMG 23416]
ATGTCAAAAAGTCACGCTCGCCCAAAGTTTAAACGTCTACAAAGCACCCTTATGGGCGCCTTTATGCTGGTCAGCCTTAT
CCCAATGCTGCTGGTTGCTTTTTTCTTTCTTCGTTCTCACACTCAAGACCTTCAAGAACAAAGCACCACTTACCTAACCT
CGATGAGAGATGGCAATGCCAACAAGGTTAGCGCTTACATAGGAAATCTTGACTCAGAAGTGATTGGCTTTGTTCATTCG
GAATTGGCTTACGCCAGTGGTGGACGTTTTTATGGGCTGATTGACTCTTTTAGACGCTTAGGGAAAGACCTAGAAGAATC
TAGAAGCATAGGTCAACAGAGGTATATTCCAGGCTCAGGGGATGCTATCCGCACCAAAACCGTCAGAGGCAACGACAACT
ACACCAGTGTTGAGCGCTACCGATTACTGCATAAGCGCTACCATTCAACCTTCCAAAGCTTGTTAGAGCGCTCGGACTTC
GATGATATCGCTTTAGTGGATCTCGAGGGCAACGTCGCCTATTCAGTCCATAAGTATGATTACTATGCAACAAACCTAAA
TTCTGGTCGCTACAAACAAACCGAATTGGGCGATTTGTTCAAGCAACTAAAAGACTATGTTGCCACAAATAAAGACTCCT
TAGAGCAATACAATGACATTGTTCTTATGAGTGATTTCTCCATTGAAGGTAACTCGAGCAGCACTGAAGAAGTCGCTTGG
TTTGCTGCTCCAATCGTGCAAAGAGGTTATTTACATAGCTATGCGTTCTTTCGACTGCCTCTGTCTGCGCTCACTGACCT
CATCACCGAGGAACACCTCGTTAACCTGAATGTATCCTTATTTGATAAGTCCTTAAAACTACTCGCAAGCAGTAGCGATG
ATGTTGATGCCAAACAGAGCTCTCCTGTGGCCATAAAGGCTCTTGAAGGCTCTGCCGAGGTTGAAACCTATACCAACTTA
TCTGATGACAACACCATCGCTGCCTATGCACCTATTGATGTACACGGACTCACATGGGCCGTGGTGGTTGAGACTCCAGA
AGAAGTCGCGTTTGAACGAGTTAACCAGTTATTTAAGCTGTTTTTCATCATTGTATTGAGCGCTGCCATTGTCGTAGTAG
TAGCCTCTCACTATCTGTCGAACTTCATTACCACCCCATTGCTCAAGCTTACGTGGGCCGCTGAGCGAATCTCTGCAGGA
GATCTGAAAGAAAATGTTGAAGGCACTAAGCGCAAGGATGAGATAGGAAGGCTCGCAGTCAGCTTTGAGAGAATGCAGCG
TTCTATTCGAGAAAAGATTGAATTAATCAAAGAGCAAAACAAAGAGCTCGAATTTAACCTAGACACCATTGCCACGCAAA
ATGGTGAGCTTCAGCTTGCTGATAAACTAAAAGATGAATTCTTAGCTACCACTTCCCATGAACTAAGGACACCACTGCAC
GGCATGATTGGAGTCGCGCAAGCTATGCTTAGCGAGGCTCATGGAAGCGTACCGCCTTCTCAACGATACCAATTAGAAAT
CATCATCAATAGCGGGCATAGACTGTCTAACTTGGTGGATGACCTATTGGATTACCACAAGATGCAATATGGTCATTTGC
AGCTTGAACCCACCGCAGTTTCGCTCTCATCTGCATCTCAGCTGGTTGTCGAGTTATCAAAACATCTGGTTGATAAGAAG
CCCGTTCGTATCATCAACCAAATTGATAGTAGCTTGCCTATGGTTAGTGCCGATCCGCAAAGGCTTGAGCAGGTGCTGTA
CAACCTTGTTGGCAACGCGATCAAATTCACTTCGGAAGGCAAAGTGATCTTGAATGCAGAGCAGCAAGGCGAACAACTAA
GAATACAAGTGATCGATACCGGACATGGCATCCCTAAAGAGGATCTAGATAATATATTTGAGCCTCTAACTCAAAGTAAC
TCTTCTGGTTACCATCAAGGCACAGGGCTTGGGTTATCCATCAGTAAACGTTTGATTGAAATCATGCGCGGCGAACTGAC
TGTTACCAGCCAACCCATGCTCGGCACTACCTTTACCATGACTCTGCCACTTGCCAGCAAGCAAGAACTTGATGCCTTCA
ACAGTGAATCAGAAACTGAACATTATTCTCGAGAAGAGTTTCATCAAACCGAGTTTGATGAGCAGTCCCTCTCTTTGCCT
AAGAATCCAGATGGCAAGCTAGTCATGATCGCGGACGATGAACCTGTGAACCTCAAGATTCTGGAAAGTTTCTTGCGAGT
AGAGGGATATAGGGTGGTGAGCGCGCATAATGGCCGAGAGGTGCTTGACCTTATTGCTGAGGAAAAACCCGATATCCTGC
TGTTAGATATCATGATGCCGGAGCTGAGCGGATTCCAAGTTTGTGAGTACTTACGTAACTTGTATAACTACAACGAACTG
CCAATCATCATGCTCACCGCTTTGAACCAAACTGAAGACAAAGTGAAAGGCTTTGACTGTGGTGCCAATGACTATCTGGT
TAAGCCATTTAATAAGCAGGAGCTATCCGCGCGAATTCAGGTACATATTAATGCTAGTCTGTCGGAAAGGCGTAAGCAGG
AGAACGACTCACTAAGTGCTGAACTCACCCAGCGTGAAAGAGTCGAATCTTTACTTCTAGAGACTCAAACTAAGCTTCTC
GAGCAACTAGAGAGTACTCCAGAGGCCATCGTTTGTATCAACGAAAACCATAAGATTACCTTTGCTAATAAATCGGCTAC
TGAACTACTAAAGCGCTCTATTGAGCAAATCAAGCGCTCGCAAATTGAAGAGTTCATTGCGCCGAAGCACCTGCAATTTG
ATCAGCCACACCGCAGCATGGATATCGATGTCTTTGTCGATGAAACCAAACAGGTCATAGCCAGTGATATCTTTACCCTG
CCGTTAGAAACCGGGTTAAGAGGCATGATTATCTTCAACTCAGATCCTGATGATGCTAACCAACGCATCAATAATCTCGA
AGTCGCGCTGGATGCCTTAGCGAGCTACGCTTTTGCTGGCGATAAGTCACAACTAGAAGAGCTTAAAGAGCTAGGGGATG
AGTTTGCAGACTTGGTCGAACAGTTAGATAACAGCAAGGACAACAAACAGCAGAATATGCGACAACTGCTCGTAGACTGC
ATGTCATCAGCACTTGAGTATTGGGAAAGCCATGACGGCAATACCAAATTCAACTTCGCTGAGCAAAGTGGTCTATGGCG
TGTATATCTGGATAGAAGCACCCTGCAAACCAGAACGCTGGATAAATACCTAAGAATAGAGACGCTACCCAAGACTCCAC
GCTGGCGTACCGTGCTCAATTCTCTAGACTTTATTCTTGCACACTCAAATCACGATGATGCTCAGCGAGCACAGTTAGCT
GATTTAAGAGAACAACTACAGAGCTTAGTCACCCAATAA

Domains

Predicted by InterproScan.

• His Kinase A (phospho-acceptor) domain (HisKA) (464-530)

• Response regulator receiver domain (Response_reg) (728-840)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (578-685)

• HAMP domain (HAMP) (379-431)

• PAS fold (PAS) (881-929)

3D structure

• AlphaFold DB: A0A4Y3IL13

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	57.055	100	0.572