Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   RWU16_RS01470 Genome accession   NZ_CP136167
Coordinates   312182..312922 (+) Length   246 a.a.
NCBI ID   WP_000076099.1    Uniprot ID   A0A9P2QDS6
Organism   Acinetobacter baumannii strain ABO21-A061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307182..317922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU16_RS01455 (RWU16_01455) ponA 307769..310324 (-) 2556 WP_000736667.1 penicillin-binding protein PBP1a -
  RWU16_RS01460 (RWU16_01460) pilM 310486..311544 (+) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene
  RWU16_RS01465 (RWU16_01465) pilN 311544..312185 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  RWU16_RS01470 (RWU16_01470) pilO 312182..312922 (+) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  RWU16_RS01475 (RWU16_01475) pilP 312933..313460 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RWU16_RS01480 (RWU16_01480) pilQ 313523..315688 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RWU16_RS01485 (RWU16_01485) aroK 315700..316269 (+) 570 WP_000643712.1 shikimate kinase AroK -
  RWU16_RS01490 (RWU16_01490) aroB 316298..317380 (+) 1083 WP_001193991.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27801.55 Da        Isoelectric Point: 4.8357

>NTDB_id=889125 RWU16_RS01470 WP_000076099.1 312182..312922(+) (pilO) [Acinetobacter baumannii strain ABO21-A061]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=889125 RWU16_RS01470 WP_000076099.1 312182..312922(+) (pilO) [Acinetobacter baumannii strain ABO21-A061]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683