Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU35_RS12370 Genome accession   NZ_AP024864
Coordinates   2663647..2664651 (+) Length   334 a.a.
NCBI ID   WP_017031415.1    Uniprot ID   -
Organism   Vibrio breoganii strain CAIM 1829     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2658647..2669651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU35_RS12350 metJ 2658899..2659216 (+) 318 WP_017029415.1 met regulon transcriptional regulator MetJ -
  OCU35_RS12355 - 2659306..2660568 (-) 1263 WP_102452034.1 malic enzyme-like NAD(P)-binding protein -
  OCU35_RS12360 rpmE 2660736..2660954 (-) 219 WP_004737142.1 50S ribosomal protein L31 -
  OCU35_RS12365 priA 2661254..2663455 (+) 2202 WP_261825428.1 primosomal protein N' -
  OCU35_RS12370 cytR 2663647..2664651 (+) 1005 WP_017031415.1 DNA-binding transcriptional regulator CytR Regulator
  OCU35_RS12375 - 2664717..2665265 (+) 549 WP_261825429.1 SPOR domain-containing protein -
  OCU35_RS12380 hslV 2665411..2665935 (+) 525 WP_017029410.1 ATP-dependent protease subunit HslV -
  OCU35_RS12385 hslU 2665945..2667279 (+) 1335 WP_065599352.1 HslU--HslV peptidase ATPase subunit -
  OCU35_RS12390 - 2667349..2668515 (-) 1167 WP_261825430.1 nucleotide sugar dehydrogenase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36486.54 Da        Isoelectric Point: 4.8595

>NTDB_id=88905 OCU35_RS12370 WP_017031415.1 2663647..2664651(+) (cytR) [Vibrio breoganii strain CAIM 1829]
MATMKDVAELAGVSTATVSRALMNPEKVSSSTRKRVEEAVIESGYCPSAMMRSMKRNESRTLVVIVPDLCDPYFSEIIRG
IEAAASEQGYLILHGDSSQQKCRDNSLVNLIYSKQADGLILLGTDLPIDASKSEQRNLPPMVMACEYAPELELPTVHIDN
LTASFQAVNYLAKLGHKRIGEIRGPDNAPLSSFRSQGFQQALRRAGLSIDLTNSASGDFSFESGALALRKLMSAGSPPSA
VFCHNDMMAIGAIKEAKNMGLRVPQDISFIGFDNIEFSEYCDPPLTTVSQPRYDIGYQATQMLFELLNGNEINSGSRLLD
TELVVRESTLPPSY

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=88905 OCU35_RS12370 WP_017031415.1 2663647..2664651(+) (cytR) [Vibrio breoganii strain CAIM 1829]
ATGGCGACCATGAAGGATGTTGCTGAACTCGCTGGCGTTTCCACTGCGACAGTATCAAGAGCGTTAATGAACCCAGAAAA
GGTTTCCTCCTCAACTCGTAAGCGAGTAGAAGAAGCGGTTATCGAGTCGGGTTACTGCCCAAGCGCTATGATGCGTAGCA
TGAAACGTAACGAATCAAGAACCCTCGTAGTCATAGTTCCTGACTTATGCGACCCTTACTTTTCTGAGATCATTCGTGGC
ATCGAAGCGGCGGCTTCAGAGCAAGGCTACCTAATACTGCACGGCGACAGCTCGCAGCAAAAATGTCGAGATAACTCACT
AGTCAATCTCATCTATTCAAAGCAAGCGGATGGCTTGATCTTGCTTGGCACCGATTTACCTATCGATGCCAGTAAATCAG
AACAAAGAAACCTTCCACCTATGGTGATGGCTTGCGAATACGCGCCTGAGCTAGAACTGCCTACCGTGCATATAGACAAC
CTCACCGCTTCTTTTCAGGCGGTGAACTATCTGGCTAAATTAGGACATAAGCGCATTGGCGAGATCCGTGGTCCAGACAA
TGCGCCGCTATCTAGCTTCCGAAGCCAGGGCTTCCAGCAAGCACTGCGACGTGCAGGCCTTAGCATTGACTTAACTAATT
CTGCCAGTGGTGACTTTAGCTTCGAATCTGGGGCACTGGCACTGCGTAAACTGATGAGCGCCGGCTCTCCACCCAGCGCT
GTGTTTTGTCACAACGATATGATGGCGATTGGCGCAATCAAAGAAGCCAAAAATATGGGGCTGAGAGTTCCACAAGACAT
CTCATTTATCGGATTCGACAATATCGAGTTTTCCGAATACTGCGATCCACCACTGACCACAGTATCCCAGCCTCGCTACG
ATATCGGCTATCAAGCCACTCAAATGCTGTTCGAACTTCTTAATGGCAATGAGATCAATTCAGGCTCACGACTTCTCGAT
ACAGAGCTAGTGGTAAGAGAAAGTACCTTACCGCCGAGTTACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

70.27

99.701

0.701
  cytR Vibrio parahaemolyticus RIMD 2210633

70.181

99.401

0.698

Multiple sequence alignment