Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   AAEO47_RS22080 Genome accession   NZ_CP151543
Coordinates   4786584..4787108 (+) Length   174 a.a.
NCBI ID   WP_257319086.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HN232     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4781584..4792108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO47_RS22060 (AAEO47_22060) - 4781654..4784122 (-) 2469 WP_003114576.1 penicillin-binding protein 1A -
  AAEO47_RS22065 (AAEO47_22065) pilM 4784307..4785371 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  AAEO47_RS22070 (AAEO47_22070) pilN 4785371..4785967 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  AAEO47_RS22075 (AAEO47_22075) pilO 4785964..4786587 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  AAEO47_RS22080 (AAEO47_22080) comL/pilP 4786584..4787108 (+) 525 WP_257319086.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  AAEO47_RS22085 (AAEO47_22085) pilQ 4787162..4789306 (+) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  AAEO47_RS22090 (AAEO47_22090) aroK 4789318..4789836 (+) 519 WP_003095833.1 shikimate kinase AroK -
  AAEO47_RS22095 (AAEO47_22095) aroB 4789886..4790992 (+) 1107 WP_003107839.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19102.91 Da        Isoelectric Point: 9.3493

>NTDB_id=889032 AAEO47_RS22080 WP_257319086.1 4786584..4787108(+) (comL/pilP) [Pseudomonas aeruginosa strain HN232]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGY
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=889032 AAEO47_RS22080 WP_257319086.1 4786584..4787108(+) (comL/pilP) [Pseudomonas aeruginosa strain HN232]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGTAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362