Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RWW94_RS06640 Genome accession   NZ_CP136163
Coordinates   1419317..1421581 (+) Length   754 a.a.
NCBI ID   WP_168420984.1    Uniprot ID   -
Organism   Brevibacillus laterosporus strain Wq-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1414317..1426581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWW94_RS06615 (RWW94_06615) - 1414446..1415201 (+) 756 WP_018672202.1 ThiF family adenylyltransferase -
  RWW94_RS06620 (RWW94_06620) - 1415542..1416858 (+) 1317 WP_119733653.1 AAA family ATPase -
  RWW94_RS06625 (RWW94_06625) - 1417180..1417353 (-) 174 WP_018672200.1 hypothetical protein -
  RWW94_RS06630 (RWW94_06630) cymR 1417466..1417885 (+) 420 WP_003338326.1 cysteine metabolism transcriptional regulator CymR -
  RWW94_RS06635 (RWW94_06635) - 1417915..1419057 (+) 1143 WP_168420983.1 cysteine desulfurase family protein -
  RWW94_RS06640 (RWW94_06640) recD2 1419317..1421581 (+) 2265 WP_168420984.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RWW94_RS06645 (RWW94_06645) - 1421667..1422167 (+) 501 WP_094700247.1 PRC-barrel domain-containing protein -
  RWW94_RS06650 (RWW94_06650) - 1422188..1422385 (+) 198 WP_003345362.1 hypothetical protein -
  RWW94_RS06655 (RWW94_06655) - 1422428..1422601 (+) 174 WP_018672196.1 hypothetical protein -
  RWW94_RS06660 (RWW94_06660) - 1422799..1423887 (+) 1089 WP_104065648.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 754 a.a.        Molecular weight: 85799.03 Da        Isoelectric Point: 5.5610

>NTDB_id=889003 RWW94_RS06640 WP_168420984.1 1419317..1421581(+) (recD2) [Brevibacillus laterosporus strain Wq-1]
MQQQALPLFRETYIRGQVKHEIFYNEENWYAIIRFKVEETTEPIKDKDVIVVGHFPRPHEDETYTFYGEWKDHPKYGKQY
VAERYERETPKTKSGIEKYLASGLFSGIGKKLAKRIVEHLGVDALTIIAENPDDLAAIPGISPKRAKQIYESVLEHQSLE
RTMVFLYEFGIGVHLALRIYQAYKHNTMTVLTETPYKLIEDVQGIGFKRADEIALSTGIAASSPERVMAACLYVLQETGY
SEGHVYFPHEELMERAISLLTECGGHVFEVEDVQRSIEQLVMDNKVHWEEERVYLPSLFFAEIGLAKRLHCFASRENPDS
YPASEFYQAIGKVEEELGISYASKQREAVEKAMDSGLMLLTGGPGTGKTTVIRGICHVFANLQGISLDMKKYDTQDNPFP
ILLVAPTGRAAKRMSETTGLPAMTIHRLLGWKGESFEHDQDNPVRGKMIIIDEMSMVDVWLANQLFRCLPKDINVVMVGD
PDQLPSVGPGNVLFDMLESNVIPVVQLTDIYRQAEESSIIQLAHDIRVGKVPQDLLTPTQDRRFFTTSPQNVVDVVKQIC
SSSVNKGYTAKDIQVLAPVYKGVAGVNHINEELQLLFNPPSEQKREVTFGETVFRVKDKVLQLVNNAEEQVFNGDMGEVV
AIFRPTENEENEEQLVVSFEGREVVYRRSQYHQLTLAYCCSVHKSQGSEFPIVILPLVRNYYRMLRRKLIYTGVTRSKSF
LLMCGDPDAFRIAVQNDEEGIRYSYLQDRLRLYG

Nucleotide


Download         Length: 2265 bp        

>NTDB_id=889003 RWW94_RS06640 WP_168420984.1 1419317..1421581(+) (recD2) [Brevibacillus laterosporus strain Wq-1]
GTGCAACAACAGGCCCTCCCGTTGTTTCGTGAGACCTACATTCGAGGACAAGTAAAACACGAAATATTTTATAACGAAGA
GAACTGGTATGCCATCATTCGTTTTAAAGTGGAAGAGACAACGGAACCGATTAAAGATAAAGATGTCATTGTTGTAGGGC
ATTTTCCGCGTCCTCACGAGGATGAAACTTATACATTTTATGGTGAGTGGAAAGATCACCCGAAATATGGAAAGCAGTAT
GTAGCCGAACGCTACGAACGTGAAACACCAAAAACAAAATCAGGTATTGAAAAGTATTTAGCAAGTGGACTTTTTAGTGG
AATTGGTAAGAAGCTGGCAAAGCGGATAGTGGAACATTTAGGGGTCGATGCACTTACCATCATTGCTGAAAACCCTGACG
ATCTGGCCGCCATTCCAGGTATCTCTCCCAAACGAGCTAAGCAGATCTATGAATCAGTTCTAGAGCATCAATCATTAGAG
CGTACCATGGTCTTCTTATACGAGTTTGGGATTGGTGTCCATTTAGCTTTACGTATTTATCAAGCGTATAAGCATAATAC
AATGACGGTATTGACAGAAACTCCATATAAGCTCATTGAAGATGTGCAGGGCATTGGTTTTAAACGTGCAGACGAAATCG
CTCTGTCGACAGGAATTGCCGCATCTTCCCCGGAACGAGTGATGGCAGCGTGTCTGTATGTTTTGCAGGAAACAGGTTAT
AGTGAGGGACATGTTTATTTTCCTCATGAAGAATTAATGGAGCGGGCTATTTCGCTATTAACAGAATGTGGTGGGCACGT
TTTTGAGGTAGAAGATGTGCAGAGATCTATTGAACAATTAGTAATGGATAACAAAGTGCATTGGGAAGAGGAGCGCGTTT
ACCTCCCATCCTTATTTTTTGCAGAGATTGGACTGGCCAAACGACTTCATTGTTTTGCTTCAAGAGAGAATCCTGATAGC
TATCCTGCTTCTGAGTTTTACCAAGCTATCGGAAAAGTGGAAGAAGAATTAGGGATTAGCTATGCTTCTAAACAACGAGA
AGCAGTAGAAAAAGCAATGGATTCAGGATTAATGCTACTGACTGGGGGGCCTGGTACGGGAAAAACAACAGTCATTAGGG
GAATTTGCCATGTTTTTGCAAATTTGCAGGGAATTAGTTTGGACATGAAGAAATATGACACACAAGATAATCCCTTTCCC
ATTTTATTGGTAGCTCCTACTGGTAGGGCAGCAAAGCGTATGTCTGAGACGACAGGATTACCAGCTATGACGATCCATCG
TCTTCTTGGGTGGAAGGGAGAGAGCTTTGAGCATGATCAAGATAATCCCGTTCGGGGCAAAATGATTATTATTGATGAGA
TGTCAATGGTGGATGTTTGGTTAGCTAACCAATTATTCCGCTGTCTCCCTAAGGACATAAATGTTGTAATGGTAGGCGAC
CCTGATCAATTGCCTTCTGTAGGCCCAGGCAATGTTTTGTTTGATATGCTGGAGTCAAATGTGATCCCGGTTGTCCAGTT
GACAGATATTTATCGGCAGGCAGAAGAATCTTCTATTATTCAACTGGCTCATGACATTCGAGTGGGAAAAGTACCACAAG
ATTTACTTACTCCAACCCAAGATCGCAGATTTTTCACAACTTCGCCACAAAATGTTGTTGATGTTGTGAAACAAATCTGC
TCCAGTTCCGTAAATAAAGGATATACAGCAAAAGATATACAGGTTCTTGCCCCCGTGTACAAAGGAGTAGCCGGTGTTAA
CCACATCAATGAAGAGCTACAGCTTTTGTTCAACCCGCCTTCGGAACAGAAGCGAGAGGTAACATTTGGTGAAACGGTTT
TTCGGGTAAAAGACAAAGTACTTCAATTGGTAAATAATGCAGAAGAACAGGTATTCAACGGAGACATGGGAGAAGTTGTT
GCCATTTTTCGTCCTACAGAAAATGAGGAGAATGAAGAGCAATTGGTGGTGTCCTTTGAAGGACGAGAGGTTGTATACCG
CCGTTCACAATATCACCAACTTACTCTGGCGTACTGTTGCTCGGTGCATAAATCACAGGGTAGTGAATTTCCAATTGTTA
TTTTACCTTTAGTACGTAACTATTATCGAATGTTACGCAGAAAATTAATTTACACGGGTGTAACACGTAGCAAGTCATTT
TTGCTAATGTGTGGTGATCCAGATGCTTTTCGCATTGCGGTGCAAAATGACGAGGAAGGGATTCGTTATAGCTACTTACA
AGATCGGCTACGTTTGTACGGATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-719)

AAA domain (AAA_30)

(341-540)

Helix-hairpin-helix domain (HHH_5)

(106-151)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-246)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50

100

0.503