Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AAEO47_RS17080 Genome accession   NZ_CP151543
Coordinates   3711871..3712236 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain HN232     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3706871..3717236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO47_RS17065 (AAEO47_17065) pilK 3708215..3709090 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  AAEO47_RS17070 (AAEO47_17070) pilJ 3709151..3711199 (-) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  AAEO47_RS17075 (AAEO47_17075) - 3711284..3711820 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  AAEO47_RS17080 (AAEO47_17080) pilH 3711871..3712236 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  AAEO47_RS17085 (AAEO47_17085) pilG 3712283..3712690 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  AAEO47_RS17090 (AAEO47_17090) gshB 3712945..3713898 (+) 954 WP_003100943.1 glutathione synthase -
  AAEO47_RS17095 (AAEO47_17095) - 3714045..3714938 (+) 894 WP_003084580.1 TonB family protein -
  AAEO47_RS17100 (AAEO47_17100) - 3714987..3715556 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  AAEO47_RS17105 (AAEO47_17105) ruvX 3715556..3715990 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  AAEO47_RS17110 (AAEO47_17110) pyrR 3716102..3716614 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=889003 AAEO47_RS17080 WP_003084587.1 3711871..3712236(-) (pilH) [Pseudomonas aeruginosa strain HN232]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=889003 AAEO47_RS17080 WP_003084587.1 3711871..3712236(-) (pilH) [Pseudomonas aeruginosa strain HN232]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364