Detailed information NTG0088898

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCU35_RS06975
• Genome accession: NZ_AP024864
• Coordinates: 1495441..1496856 (+)
• Length: 471 a.a.
• NCBI ID: WP_261825056.1
• Uniprot ID: -
• Organism: Vibrio breoganii strain CAIM 1829
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1490441..1501856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU35_RS06955	-	1491313..1492338 (-)	1026	WP_261825054.1	succinylglutamate desuccinylase	-
OCU35_RS06960	-	1492436..1493095 (+)	660	WP_102430204.1	NAD-dependent epimerase/dehydratase family protein	-
OCU35_RS06965	-	1493288..1494658 (+)	1371	WP_261825055.1	L-cystine transporter	-
OCU35_RS06970	-	1494791..1495168 (+)	378	WP_017027227.1	nuclear transport factor 2 family protein	-
OCU35_RS06975	sbcB	1495441..1496856 (+)	1416	WP_261825056.1	exodeoxyribonuclease I	Machinery gene
OCU35_RS06980	-	1496860..1497222 (+)	363	WP_017030700.1	CidA/LrgA family protein	-
OCU35_RS06985	-	1497224..1497901 (+)	678	WP_065599296.1	CidB/LrgB family autolysis modulator	-
OCU35_RS06990	cdd	1498049..1498942 (+)	894	WP_102322263.1	cytidine deaminase	-
OCU35_RS06995	purT	1499093..1500268 (+)	1176	WP_261825057.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCU35_RS07000	ihfA	1500372..1500674 (-)	303	WP_017027221.1	integration host factor subunit alpha	-

Sequence

Protein

• Length: 471 a.a.
• Molecular weight: 54154.67 Da
• Isoelectric Point: 5.8499

>NTDB_id=88898 OCU35_RS06975 WP_261825056.1 1495441..1496856(+) (sbcB) [Vibrio breoganii strain CAIM 1829]
MHTDQPTFFFFDYETWGVSPAKDRPCQFAGVRTDADLNVIGEPLVIYCRSPADYLPNPEAALVTGITPQKAMKEGLSEPE
FITAIHNEMSRPNTCTLGYNSVRFDDEVTRYTCYRNFIEPYEWSYKNGNSRWDLLDVMRACHALRPEGVNWPENDEGNTS
FRLEHLSVANGIEHSNAHDAMADVYATIEMAKKVKQSQPKLFDFFYKHRGKQKLNALVDIVNMTPLVHVSGMLSTEHQKT
ALIAPIGWTPIKALITIDLTQDITPLIELSADEIKDRLYTKRSDLEEGQLPIPVKLVHLNKCPILAPLGVLTADAIERTQ
IDKEECLRKQQLLQQHPQIREKLDAVFAENREFPTSPNIEEQLYNGFFSPSDKAQMRIIRDAKPEVLGSLDIQVTDPRIA
PLLFNYRARNFFHTLTDQEQKRWLLHCRDKFEQELPNYMLNLENLGAQHQGDEHKMKILKAIYHYVEQLVS

Nucleotide

• Length: 1416 bp

>NTDB_id=88898 OCU35_RS06975 WP_261825056.1 1495441..1496856(+) (sbcB) [Vibrio breoganii strain CAIM 1829]
ATGCACACGGACCAACCCACATTCTTTTTCTTTGATTACGAGACTTGGGGAGTCAGTCCTGCAAAAGATAGACCGTGTCA
GTTTGCTGGCGTGCGCACCGATGCCGACCTAAATGTCATTGGAGAGCCGCTAGTCATCTATTGCAGATCCCCTGCAGATT
ATCTACCCAACCCCGAAGCCGCACTTGTGACCGGTATTACGCCGCAAAAGGCGATGAAGGAAGGCTTATCTGAGCCAGAG
TTCATCACTGCGATTCACAATGAAATGAGTCGCCCAAATACCTGTACTCTTGGTTATAACAGCGTGCGCTTTGACGATGA
GGTCACTCGCTACACTTGCTATCGTAATTTTATCGAACCTTATGAGTGGAGCTACAAAAACGGCAACTCTAGATGGGATC
TACTGGATGTGATGCGCGCCTGTCATGCACTGCGACCGGAAGGGGTAAACTGGCCAGAAAATGATGAAGGCAATACCAGT
TTTCGATTAGAGCATTTATCGGTTGCAAACGGCATTGAGCACAGCAACGCCCACGATGCTATGGCCGATGTCTATGCCAC
GATTGAGATGGCAAAAAAGGTTAAGCAGAGCCAGCCTAAGCTATTTGATTTCTTCTACAAACATAGAGGAAAACAAAAGC
TAAACGCCCTTGTGGACATTGTAAACATGACGCCTCTGGTTCACGTATCTGGCATGCTCAGCACTGAGCACCAGAAAACC
GCTCTAATTGCTCCTATTGGTTGGACACCGATTAAGGCGTTAATCACCATTGATCTTACTCAAGACATTACGCCGCTAAT
TGAGCTTTCAGCCGATGAAATCAAAGACAGACTTTATACCAAACGCAGCGACCTTGAAGAGGGTCAGTTGCCTATCCCAG
TAAAACTGGTGCATCTTAACAAGTGCCCCATTCTTGCGCCTTTAGGTGTGTTGACTGCTGACGCTATTGAGCGCACGCAG
ATCGACAAAGAAGAGTGCTTGAGAAAACAGCAGTTGCTGCAGCAACATCCGCAGATTCGAGAAAAACTCGATGCGGTGTT
TGCAGAAAATCGAGAGTTTCCAACTAGCCCAAACATCGAAGAGCAGCTGTACAACGGCTTTTTCTCTCCATCAGATAAGG
CGCAGATGCGCATTATCCGAGATGCAAAGCCCGAGGTATTAGGTTCTCTTGATATTCAAGTCACGGATCCTCGCATCGCT
CCTTTGCTGTTTAACTACCGAGCTCGAAATTTCTTTCATACTCTGACCGATCAAGAGCAGAAGCGATGGCTACTTCACTG
CCGTGATAAGTTTGAGCAAGAACTGCCTAATTACATGTTAAACCTAGAAAATCTTGGTGCGCAGCATCAAGGGGATGAGC
ATAAGATGAAGATCCTCAAGGCCATCTACCACTACGTTGAACAGTTGGTTTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (209-468)

• Exonuclease (RNase_T) (10-187)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	66.88	99.363	0.665