Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   F6I35_RS03460 Genome accession   NZ_CP136160
Coordinates   639137..640939 (+) Length   600 a.a.
NCBI ID   WP_070241593.1    Uniprot ID   -
Organism   Streptococcus anginosus strain UMB8616     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 634137..645939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I35_RS03440 (F6I35_0003440) - 635433..635750 (+) 318 WP_021001470.1 PTS cellobiose transporter subunit IIA -
  F6I35_RS03445 (F6I35_0003445) - 635773..636279 (+) 507 WP_024051956.1 hypothetical protein -
  F6I35_RS03450 (F6I35_0003450) celB 636319..637662 (+) 1344 WP_024051955.1 PTS cellobiose transporter subunit IIC -
  F6I35_RS03455 (F6I35_0003455) coiA 638154..639185 (+) 1032 WP_024051954.1 competence protein CoiA Machinery gene
  F6I35_RS03460 (F6I35_0003460) pepF 639137..640939 (+) 1803 WP_070241593.1 oligoendopeptidase F Regulator
  F6I35_RS03465 (F6I35_0003465) - 640941..641624 (+) 684 WP_024051952.1 O-methyltransferase -
  F6I35_RS03470 (F6I35_0003470) prsA 641731..642669 (+) 939 WP_024051951.1 peptidylprolyl isomerase PrsA -
  F6I35_RS03475 (F6I35_0003475) - 642807..643376 (+) 570 WP_081333904.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69296.26 Da        Isoelectric Point: 4.5220

>NTDB_id=888957 F6I35_RS03460 WP_070241593.1 639137..640939(+) (pepF) [Streptococcus anginosus strain UMB8616]
MAKQRNEIEEKYTWDLTTIFTTDEAFEAELTQVSKELKEASSLAGHLLDSSDSLLKTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMAIYSEFGQAFAFYEPEFMAITDEQYQTFLAEKPELQIYQHFFDKLLQKKPHILSQREEELLAGA
GEIFSAAGETFGILDNADIVFPTVHDEEGNEVQLTHGNYISLVESKNRTVRKETYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRNFSSAREAALSANFIPESVYDSLVSAVNKHLPLLHRYIALRAKILGLSDLKMYDLYTPLSEADYKFTYEEALM
KAEEVLAILGEDYLGRVKEAFSDRWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTREN
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNDLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYSTGFSAASALADKIVNGTQEDKEKYLNYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=888957 F6I35_RS03460 WP_070241593.1 639137..640939(+) (pepF) [Streptococcus anginosus strain UMB8616]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGACCTAACAACGATTTTCACAACAGATGAAGCTTTTGA
GGCAGAGTTAACTCAAGTTTCAAAAGAATTAAAAGAAGCCAGCAGCTTAGCAGGGCATCTTTTGGACTCATCTGACAGCC
TTTTAAAAACAACAGAAATCCAATTGGACTTGATGCGTCGTATCGAAAAACTCTATTCCTATGCTCACATGAAAAATGAC
CAAGATACGCGCGTGGCAAAATATCAAGAATACCAAGCCAAAGGAATGGCCATTTATAGTGAGTTCGGACAGGCCTTTGC
TTTTTATGAGCCAGAATTTATGGCAATCACAGACGAGCAATATCAGACTTTCTTAGCTGAAAAGCCCGAATTGCAAATCT
ATCAGCATTTCTTTGATAAGCTACTGCAAAAGAAACCTCACATCCTTTCTCAACGTGAGGAAGAATTGTTAGCAGGAGCT
GGTGAAATTTTTAGTGCTGCGGGTGAAACTTTTGGAATCTTAGATAATGCTGATATTGTCTTTCCAACCGTGCACGACGA
AGAAGGAAATGAAGTGCAATTGACGCACGGAAATTACATTAGTTTAGTGGAGTCGAAAAATCGTACAGTCCGCAAGGAAA
CTTATGAAGCGCTTTACAGCGTCTATGAGCAATACCAACATACTTATGCTAAGACACTCCAAACGAATGTTAAAGTTCAT
AATTACAATGCCAAAGTTCGTAATTTTTCTTCTGCGCGTGAAGCTGCTTTGTCTGCTAACTTTATTCCAGAAAGTGTTTA
TGATAGCTTAGTGTCTGCGGTCAACAAACACTTGCCACTCTTACATCGCTACATCGCCCTACGTGCAAAGATTTTAGGCC
TTTCTGATTTGAAAATGTATGACCTCTATACACCATTGTCAGAAGCAGATTACAAATTTACTTATGAGGAAGCCTTGATG
AAAGCAGAAGAAGTCTTAGCTATCCTTGGAGAAGATTATCTAGGTCGAGTAAAAGAAGCCTTTTCAGATCGTTGGATTGA
TGTTTATGAAAACCAAGGTAAGCGCTCTGGGGCTTATTCTGGTGGTTCTTACGATACCAATGCTTTTATGTTGCTCAACT
GGCAAGATACGTTGGACAATCTTTTCACGCTGGTTCATGAAACAGGTCACAGTATGCATTCTAGCTATACTCGTGAAAAT
CAGCCATACGTTTACGGAGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACGACCAATGAAAATATCCTGACGGAGAA
ATTATTGGAAGAAGTAGATGACGATCAAACCCGCTTTGCGATTCTGAATCATTTCTTGGACGGTTTCCGTGGAACTGTTT
TCCGCCAAACTCAATTTGCCGAGTTTGAACATGCCATTCACAAAGCTGACCAAGAAGGTCAAGTCTTGACGAGTGAATTT
TTGAATGATTTGTACGCAGATTTGAATGAAAAATATTATGGTTTGACGAAAGAAGACAACCCACAAATTCAATACGAATG
GGCACGGATTCCGCATTTCTACTATGATTACTATGTTTTTCAATACTCAACCGGTTTCTCAGCTGCTTCTGCCTTAGCAG
ATAAGATTGTTAACGGAACGCAAGAAGATAAAGAGAAGTATCTCAACTACTTGAAAGCAGGAAATTCTGATTATCCGCTA
AATGTCATTAAAAAAGCTGGTGTAGATATGGAAAAAGAAGACTACCTCAATGCTGCTTTTGCAGTCTTTGAACGTCGTCT
TGATGAATTTGAAGCACTCGTAGAAAAGTTAGGACTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.624

99.333

0.682