Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F6I35_RS01245 Genome accession   NZ_CP136160
Coordinates   205762..207180 (+) Length   472 a.a.
NCBI ID   WP_101750417.1    Uniprot ID   -
Organism   Streptococcus anginosus strain UMB8616     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 200762..212180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I35_RS01225 (F6I35_0001225) dinB 201368..202435 (+) 1068 WP_024051453.1 DNA polymerase IV -
  F6I35_RS01230 (F6I35_0001230) - 202700..203900 (-) 1201 Protein_206 IS110 family transposase -
  F6I35_RS01235 (F6I35_0001235) - 204231..205265 (+) 1035 WP_070241497.1 S66 peptidase family protein -
  F6I35_RS01240 (F6I35_0001240) - 205359..205802 (+) 444 WP_070815068.1 dUTP diphosphatase -
  F6I35_RS01245 (F6I35_0001245) radA 205762..207180 (+) 1419 WP_101750417.1 DNA repair protein RadA Machinery gene
  F6I35_RS01250 (F6I35_0001250) gltX 207388..208845 (+) 1458 WP_024053164.1 glutamate--tRNA ligase -
  F6I35_RS01255 (F6I35_0001255) dapD 208962..209660 (+) 699 WP_024053163.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  F6I35_RS01260 (F6I35_0001260) - 209673..210803 (+) 1131 WP_024053162.1 N-acetyldiaminopimelate deacetylase -
  F6I35_RS01265 (F6I35_0001265) - 210848..211375 (+) 528 WP_024053161.1 5-formyltetrahydrofolate cyclo-ligase -
  F6I35_RS01270 (F6I35_0001270) - 211368..212048 (+) 681 WP_024053160.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51510.27 Da        Isoelectric Point: 5.8400

>NTDB_id=888929 F6I35_RS01245 WP_101750417.1 205762..207180(+) (radA) [Streptococcus anginosus strain UMB8616]
MVCGQVVLEARGIKKEESIIAKKKTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEIEVAEVKNARVSLTGEKSRPMKLSE
VASINVNRTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHKGTVLYVSGEESAEQIKLRAERLGDID
SEFYLYAETNMQQIRAEIEKIKPDFLIIDSIQTIISPEISSVQGSVSQVREVTAELMQLAKANNIATFIVGHMTKEGTLA
GPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTR
PILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDL
PTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLNIPETIEIIGVTTIGEVLKKVFG

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=888929 F6I35_RS01245 WP_101750417.1 205762..207180(+) (radA) [Streptococcus anginosus strain UMB8616]
ATGGTGTGCGGACAGGTGGTTTTGGAAGCACGGGGCATTAAGAAAGAGGAATCTATCATAGCCAAGAAAAAAACGACATT
TGTTTGTCAAAATTGTGAATACCATTCGCCCAAGTATCTAGGGCGCTGTCCTAACTGTGGGGCTTGGTCTTCTTTTGTAG
AAGAGATCGAAGTTGCAGAGGTTAAGAATGCGCGTGTTTCTCTGACAGGTGAAAAAAGTCGACCGATGAAGTTATCGGAG
GTGGCTTCTATCAATGTCAACCGTACCAAGACAGATATGGATGAGTTTAACCGCGTCTTGGGTGGTGGCGTGGTGCCAGG
AAGTTTAGTTCTAATCGGAGGAGATCCCGGTATTGGGAAATCTACCCTTTTATTGCAGGTTTCGACCCAACTATCTCACA
AGGGAACGGTATTGTATGTCAGTGGGGAAGAGTCTGCTGAGCAGATTAAGTTGCGTGCGGAGCGATTAGGCGATATTGAC
AGTGAGTTTTATCTTTATGCCGAGACCAATATGCAGCAGATTCGTGCTGAGATTGAAAAAATTAAACCAGATTTCTTGAT
TATAGACTCTATTCAGACGATTATTTCGCCAGAAATTTCCAGCGTGCAAGGGTCGGTTTCACAAGTCCGAGAAGTGACAG
CGGAGCTGATGCAGTTGGCAAAAGCCAACAATATTGCCACCTTTATCGTGGGCCATATGACCAAGGAAGGAACGCTGGCT
GGACCTAGAACCTTGGAACACATGGTGGATACGGTACTTTATTTTGAAGGTGAGCGACAGCATACTTTTCGTATTTTGCG
TGCGGTCAAAAATCGCTTCGGCTCTACGAATGAAATCGGCATTTTTGAGATGCAGTCAGGTGGGCTGGTTGAAGTGCTCA
ATCCTAGTCAAGTTTTCTTAGAGGAGCGTTTAGATGGGGCAACAGGCTCTTCTATCGTGGTGACTATGGAGGGGACGCGT
CCAATCCTTGCGGAAGTACAAGCTTTGGTGACACCGACCATGTTTGGCAATGCCAAGCGGACAACGACAGGATTGGATTT
CAATCGTGCTAGTCTGATTATGGCTGTTTTGGAAAAGCGAGCAGGGTTATTATTGCAAAATCAAGATGCCTACCTCAAGT
CAGCAGGCGGTGTCAAATTAGATGAGCCAGCCATTGACTTAGCTGTTGCTGTTGCAATTGCTTCTAGTTATAAAGATTTG
CCAACGAATCCACAAGAATGTTTTATTGGTGAAATCGGTCTGACGGGCGAAATCCGCCGTGTCAATCGCATTGAGCAGCG
TATCAATGAAGCTGCTAAGCTGGGCTTCACCAAAGTTTACGCTCCTAAAAACTCTCTGAACGGGTTGAACATTCCCGAAA
CTATTGAAATTATTGGTGTAACAACGATTGGTGAAGTGTTGAAGAAGGTGTTTGGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(380-444)

AAA domain (AAA_25)

(84-237)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(27-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

90.929

95.763

0.871
  radA Streptococcus pneumoniae D39

90.929

95.763

0.871
  radA Streptococcus pneumoniae R6

90.929

95.763

0.871
  radA Streptococcus pneumoniae TIGR4

90.929

95.763

0.871
  radA Streptococcus mitis SK321

90.929

95.763

0.871
  radA Streptococcus mitis NCTC 12261

90.708

95.763

0.869
  radA Bacillus subtilis subsp. subtilis str. 168

62.144

96.822

0.602