Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU35_RS02500 Genome accession   NZ_AP024864
Coordinates   511236..511751 (+) Length   171 a.a.
NCBI ID   WP_017027430.1    Uniprot ID   A0A511QWJ9
Organism   Vibrio breoganii strain CAIM 1829     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 506236..516751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU35_RS02490 - 506661..509549 (+) 2889 WP_065598411.1 pitrilysin family protein -
  OCU35_RS02495 gshA 509648..511219 (+) 1572 WP_261825592.1 glutamate--cysteine ligase -
  OCU35_RS02500 luxS 511236..511751 (+) 516 WP_017027430.1 S-ribosylhomocysteine lyase Regulator
  OCU35_RS02505 - 511821..513083 (-) 1263 WP_017027431.1 HlyC/CorC family transporter -
  OCU35_RS02510 - 513159..513953 (-) 795 WP_017027432.1 inner membrane protein YpjD -
  OCU35_RS02515 ffh 514104..515495 (+) 1392 WP_017027435.1 signal recognition particle protein -
  OCU35_RS02520 rpsP 515744..515992 (+) 249 WP_017027436.1 30S ribosomal protein S16 -
  OCU35_RS02525 rimM 516029..516559 (+) 531 WP_017027437.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18769.36 Da        Isoelectric Point: 4.4345

>NTDB_id=88892 OCU35_RS02500 WP_017027430.1 511236..511751(+) (luxS) [Vibrio breoganii strain CAIM 1829]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPSGDTITVFDLRFTQPNKDILSERGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSESDVATAWVASMEDVLKVEGQNKIPELNEYQCGTADMHSLEEAKAIASAILEAGVSVNKNDELA
LPEEMLQTLKV

Nucleotide


Download         Length: 516 bp        

>NTDB_id=88892 OCU35_RS02500 WP_017027430.1 511236..511751(+) (luxS) [Vibrio breoganii strain CAIM 1829]
ATGCCCCTATTAGACAGTTTTACAGTTGACCACACAAAAATGAATGCACCAGCAGTGCGTGTGGCAAAAACGATGCAGAC
TCCAAGTGGCGATACTATTACAGTATTCGACCTTCGCTTCACTCAACCAAACAAAGATATCCTTTCAGAAAGAGGGATTC
ATACACTTGAGCACCTTTACGCGGGTTTCATGCGTAACCATCTAAATGGTGATTCTGTTGAGATCATCGATATCTCTCCA
ATGGGTTGCCGCACAGGCTTTTACATGAGCCTGATTGGTACGCCATCAGAATCTGATGTAGCTACTGCATGGGTTGCCTC
AATGGAAGACGTACTTAAGGTTGAGGGACAAAACAAGATCCCTGAGCTGAATGAATATCAATGTGGCACTGCAGATATGC
ACTCTCTAGAAGAAGCGAAAGCCATTGCTAGCGCTATTTTAGAAGCGGGCGTATCAGTGAACAAAAATGATGAGCTTGCA
CTGCCAGAAGAGATGCTACAAACGCTTAAGGTGTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A511QWJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.211

100

0.842

Multiple sequence alignment