Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV29_RS21725 Genome accession   NZ_AP024862
Coordinates   947737..948825 (-) Length   362 a.a.
NCBI ID   WP_084193427.1    Uniprot ID   -
Organism   Vibrio aerogenes strain LMG 19650     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 942737..953825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV29_RS21705 - 943514..943732 (+) 219 WP_245796937.1 hypothetical protein -
  OCV29_RS21710 - 943816..944112 (+) 297 WP_084193426.1 hypothetical protein -
  OCV29_RS21715 - 944450..944974 (+) 525 WP_073604938.1 hypothetical protein -
  OCV29_RS21720 - 945121..947721 (-) 2601 WP_073604903.1 LuxQ periplasmic sensor domain-containing protein -
  OCV29_RS21725 luxP 947737..948825 (-) 1089 WP_084193427.1 substrate-binding domain-containing protein Regulator
  OCV29_RS21730 - 949071..949361 (-) 291 WP_073604905.1 GIY-YIG nuclease family protein -
  OCV29_RS21735 - 949392..950045 (-) 654 WP_073604906.1 YceH family protein -
  OCV29_RS21740 - 950120..950350 (-) 231 WP_139281642.1 hypothetical protein -
  OCV29_RS21745 - 950648..950965 (+) 318 WP_073604908.1 DUF496 family protein -
  OCV29_RS21750 - 951320..952108 (+) 789 WP_073604909.1 lipase -
  OCV29_RS21765 - 952573..953409 (-) 837 WP_139281643.1 HEAT repeat domain-containing protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 41290.21 Da        Isoelectric Point: 9.2866

>NTDB_id=88883 OCV29_RS21725 WP_084193427.1 947737..948825(-) (luxP) [Vibrio aerogenes strain LMG 19650]
MAKFFRLMCVMTGLLAVSGVGAQGNYWQYNEYLNAYPHQKVLTQKLEHEVGNPPVHLNFIQTDPVSVSVIYPGQQISDYW
SRNIKAFELRLKELGIQYHLHQLFTRPNMDIRQQSQSLMEALRSKSDYLIFTLDTARHRKFIEHVLGSSKTKLILQNITT
PVRSWKERQPLLYVGFDHQTGTLKLAHYFKKKLKPGAHYSMLYFSPGYISEARGDTFIQAMGKHYQLVSSFYTQANQQSS
YNITLENIKQNPDIDLLYACSTDVALGAVKALDKAGRKKDVLVNGWGGGSAELDAILRGDLDVTVMRMNDDTGIAMAEAI
KWDLEGKEVPTVYSGSFELVSRDDSPEKIEQLKKRAFRYSDR

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=88883 OCV29_RS21725 WP_084193427.1 947737..948825(-) (luxP) [Vibrio aerogenes strain LMG 19650]
ATGGCTAAGTTTTTCCGGCTTATGTGTGTTATGACAGGTTTATTGGCTGTATCCGGTGTTGGAGCACAGGGTAATTATTG
GCAATACAATGAATATCTTAACGCATATCCTCATCAGAAAGTATTGACACAGAAGCTTGAGCATGAGGTAGGAAACCCAC
CAGTGCATCTGAATTTTATTCAGACTGATCCTGTTTCTGTTTCAGTGATTTATCCGGGGCAACAGATTTCGGATTACTGG
AGCAGGAATATTAAAGCGTTTGAACTCCGGTTGAAAGAACTGGGGATTCAATACCATCTTCATCAGTTATTTACACGTCC
GAATATGGATATCAGGCAGCAGAGTCAATCCTTGATGGAGGCATTAAGAAGTAAATCTGATTACTTAATATTCACACTGG
ATACAGCCAGACACCGGAAGTTTATTGAACATGTGTTAGGTTCATCGAAAACAAAGCTGATTTTACAGAATATCACCACA
CCGGTAAGAAGCTGGAAAGAGCGTCAACCCCTGCTGTATGTTGGCTTTGATCACCAAACCGGCACATTAAAGCTGGCGCA
TTATTTTAAGAAAAAATTAAAACCCGGCGCGCATTACTCGATGCTCTACTTCTCTCCGGGGTATATCAGTGAAGCCAGAG
GTGACACTTTTATTCAGGCAATGGGGAAACATTATCAGCTGGTCTCATCTTTTTATACTCAGGCGAATCAGCAAAGTAGC
TATAATATTACTCTGGAGAATATCAAGCAGAATCCGGATATTGATTTGTTATATGCCTGCTCAACGGATGTCGCGTTAGG
GGCGGTGAAAGCATTGGATAAGGCCGGCAGAAAAAAAGATGTGCTTGTGAATGGCTGGGGGGGTGGTTCTGCTGAACTGG
ATGCCATTTTACGGGGAGATCTTGATGTGACTGTGATGAGAATGAACGATGATACCGGGATTGCGATGGCTGAAGCAATT
AAGTGGGATCTTGAAGGAAAAGAAGTGCCGACCGTTTACTCCGGGAGCTTTGAACTGGTCTCCCGCGATGATTCTCCCGA
AAAAATTGAACAGTTAAAAAAACGAGCATTTCGTTATTCTGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(67-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

59.78

100

0.599

Multiple sequence alignment