Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RWA16_RS10980 Genome accession   NZ_CP136128
Coordinates   2365915..2367279 (-) Length   454 a.a.
NCBI ID   WP_010492253.1    Uniprot ID   A0AAD1ETX9
Organism   Lacticaseibacillus casei strain LMG 24099     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2360915..2372279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA16_RS10960 (RWA16_10960) - 2361821..2362597 (-) 777 WP_087913293.1 ABC transporter permease -
  RWA16_RS10965 (RWA16_10965) - 2362623..2363501 (-) 879 WP_087912709.1 ABC transporter ATP-binding protein -
  RWA16_RS10970 (RWA16_10970) - 2363785..2364675 (+) 891 WP_087912710.1 helix-turn-helix domain-containing protein -
  RWA16_RS10975 (RWA16_10975) - 2364779..2365894 (-) 1116 WP_010492251.1 PIN/TRAM domain-containing protein -
  RWA16_RS10980 (RWA16_10980) radA 2365915..2367279 (-) 1365 WP_010492253.1 DNA repair protein RadA Machinery gene
  RWA16_RS10985 (RWA16_10985) - 2367299..2367838 (-) 540 WP_025013302.1 dUTP diphosphatase -
  RWA16_RS10990 (RWA16_10990) - 2368105..2368395 (+) 291 WP_025013303.1 GNAT family N-acetyltransferase -
  RWA16_RS10995 (RWA16_10995) - 2368838..2370157 (+) 1320 WP_087912711.1 aminopeptidase C -
  RWA16_RS11000 (RWA16_11000) - 2370286..2371632 (+) 1347 WP_087912712.1 C1 family peptidase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49051.51 Da        Isoelectric Point: 8.0456

>NTDB_id=888757 RWA16_RS10980 WP_010492253.1 2365915..2367279(-) (radA) [Lacticaseibacillus casei strain LMG 24099]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSTKSAPRQTRAGSKVKPMRMDEVTVAKETRVKTGLAELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEGVI
DQMQPDYVVIDSVQTMNVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQNGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEIPPTDCFVGEIGLTGEV
RRVNRIEDRVKEAAKLGFKRIFVPRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=888757 RWA16_RS10980 WP_010492253.1 2365915..2367279(-) (radA) [Lacticaseibacillus casei strain LMG 24099]
ATGGCGAAAGCAAAAACACAGTACGTATGTCAAAATTGTGGTTATATTTCGGCCACTTATTTAGGGCGCTGTCCGAATTG
TGGCGGTTGGAATACGTTGGTTGAAGAAACCGTCAGTTCAACCAAGTCGGCACCGCGGCAGACGCGGGCAGGCAGTAAAG
TCAAGCCGATGCGGATGGATGAAGTGACGGTTGCCAAGGAAACGCGGGTTAAGACTGGTTTGGCGGAATTAAACCGTGTG
CTTGGTGGCGGCGTGGTGCCGGGATCGCTGGTTTTGATTGGCGGGGATCCCGGAATCGGTAAATCAACCTTGCTATTGCA
GGTGTCCGGGCAGTTGGCGAGCACTGGCGGCACCGTTTTATACGTGTCAGGCGAAGAAAGTGCCAGTCAGATCAAAATGC
GTGCTGGCCGCTTAGGGGTTGCCAATTCGGGGATGTACCTGTATCCGGAAACCGACATGCCTAGCATTGAAGGTGTCATT
GACCAGATGCAGCCGGATTATGTCGTGATTGATTCGGTTCAAACCATGAATGTGCCGGATATGAACTCGGCAGTCGGTTC
GGTTGCCCAGATTCGCGAAGTCACGGCCGAACTGATGCGTATTGCCAAATCTAAAGGCGTGACAATCTTCATCGTTGGCC
ACGTCACCAAGGAAGGCGCGATTGCCGGGCCTAAAATTCTTGAGCATATGGTCGACACCGTGCTTTATTTTGAAGGCGAT
ATGCACCACACTTACCGAATTTTACGGTCGGTTAAGAATCGGTTCGGCTCCACCAATGAAATCGGCATTTTTGAGATGCA
CCAAAATGGCTTGCAGGAAGTCGCTAATCCCTCGGAAATCTTCTTAGAGGAACGGCTGGCTGGGGCCACCGGTTCGGCGG
TAGTGGTATCGATGGAAGGCACGCGGCCGATTTTGGTCGAAATTCAGGCGTTGATCAGCCCAACGATGTACGGCAATGCC
AAACGCACCAGCAGCGGATTGGATCATAATCGCGTCAGTTTGATCATGGCGGTGCTGGAAAAGCGCGCCAATCTCATGCT
GCAGAATCAGGACGCTTACCTGAAAGCCACTGGCGGCGTTAAGTTGGATGAGCCGGCGATTGACTTAGCGATGGCCGTTG
CGATTGCCTCGTCATATCGCGACAAAGAGATTCCGCCGACTGATTGTTTTGTCGGTGAAATCGGCTTAACCGGTGAAGTG
CGGCGGGTGAACCGCATTGAAGATCGGGTCAAAGAGGCGGCCAAGCTGGGATTTAAGCGGATTTTCGTACCGCGCAACAA
CCTGCAAGGCTGGCATGCACCCAAAGATATTCAAGTCATTGGGGTCACAAGCATTGCCGAAGCGTTGCATAAGGTTTTTA
ATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

68.433

99.78

0.683
  radA Streptococcus pneumoniae Rx1

68.433

99.78

0.683
  radA Streptococcus pneumoniae D39

68.433

99.78

0.683
  radA Streptococcus pneumoniae R6

68.433

99.78

0.683
  radA Streptococcus pneumoniae TIGR4

68.433

99.78

0.683
  radA Streptococcus mitis SK321

68.212

99.78

0.681
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.654