Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABJ76_RS05400 Genome accession   NZ_AP027673
Coordinates   1099786..1100301 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain PSS-07     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094786..1105301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ76_RS05355 (VEE16_10340) csrA 1095373..1095558 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABJ76_RS05385 (VEE16_10350) yqaB 1097016..1097582 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABJ76_RS05390 (VEE16_10360) yqaA 1097579..1098007 (+) 429 WP_001287457.1 YqaA family protein -
  AABJ76_RS05395 (VEE16_10370) gshA 1098080..1099636 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AABJ76_RS05400 (VEE16_10380) luxS 1099786..1100301 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABJ76_RS05405 (VEE16_10390) emrB 1100365..1101903 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABJ76_RS05410 (VEE16_10400) emrA 1101920..1103092 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABJ76_RS05415 (VEE16_10410) emrR 1103219..1103749 (-) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABJ76_RS05420 (VEE16_10420) ygaH 1103840..1104175 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  AABJ76_RS05425 (VEE16_10430) ygaZ 1104165..1104902 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=88857 AABJ76_RS05400 WP_001130211.1 1099786..1100301(+) (luxS) [Escherichia coli strain PSS-07]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=88857 AABJ76_RS05400 WP_001130211.1 1099786..1100301(+) (luxS) [Escherichia coli strain PSS-07]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment