Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RUI02_RS11095 Genome accession   NZ_CP136099
Coordinates   2182419..2183039 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. TSA-4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2177419..2188039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUI02_RS11055 (RUI02_11055) - 2178550..2179056 (-) 507 WP_038428153.1 PTS glucose transporter subunit IIA -
  RUI02_RS11060 (RUI02_11060) - 2179194..2179613 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  RUI02_RS11065 (RUI02_11065) - 2179634..2180011 (-) 378 WP_046381139.1 YppG family protein -
  RUI02_RS11070 (RUI02_11070) - 2180199..2180387 (+) 189 WP_003230690.1 YppF family protein -
  RUI02_RS11075 (RUI02_11075) - 2180426..2180797 (-) 372 WP_003246080.1 YppE family protein -
  RUI02_RS11080 (RUI02_11080) - 2180843..2181088 (-) 246 WP_004398488.1 YppD family protein -
  RUI02_RS11085 (RUI02_11085) sspM 2181287..2181391 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  RUI02_RS11090 (RUI02_11090) - 2181416..2182378 (-) 963 WP_046381140.1 DUF2515 domain-containing protein -
  RUI02_RS11095 (RUI02_11095) recU 2182419..2183039 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  RUI02_RS11100 (RUI02_11100) - 2183061..2185793 (+) 2733 WP_046381141.1 PBP1A family penicillin-binding protein -
  RUI02_RS11105 (RUI02_11105) - 2185869..2186363 (-) 495 WP_029726783.1 YpoC family protein -
  RUI02_RS11110 (RUI02_11110) nth 2186360..2187019 (-) 660 WP_009967580.1 endonuclease III -
  RUI02_RS11115 (RUI02_11115) dnaD 2187038..2187736 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=888409 RUI02_RS11095 WP_004399067.1 2182419..2183039(+) (recU) [Bacillus sp. TSA-4]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=888409 RUI02_RS11095 WP_004399067.1 2182419..2183039(+) (recU) [Bacillus sp. TSA-4]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1