Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RUI02_RS07880 Genome accession   NZ_CP136099
Coordinates   1491350..1491628 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus sp. TSA-4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486350..1496628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUI02_RS07860 (RUI02_07860) - 1487538..1488449 (+) 912 WP_046380996.1 ketopantoate reductase family protein -
  RUI02_RS07865 (RUI02_07865) - 1488483..1489715 (-) 1233 WP_003232341.1 aminopeptidase -
  RUI02_RS07870 (RUI02_07870) - 1489824..1489958 (-) 135 WP_003238865.1 protein YkpC -
  RUI02_RS07875 (RUI02_07875) mreBH 1490059..1491066 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  RUI02_RS07880 (RUI02_07880) abrB 1491350..1491628 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  RUI02_RS07885 (RUI02_07885) kinC 1491818..1493104 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  RUI02_RS07890 (RUI02_07890) - 1493120..1493947 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  RUI02_RS07895 (RUI02_07895) ktrC 1494010..1494675 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  RUI02_RS07900 (RUI02_07900) ade 1494830..1496563 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=888404 RUI02_RS07880 WP_003244728.1 1491350..1491628(+) (abrB) [Bacillus sp. TSA-4]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=888404 RUI02_RS07880 WP_003244728.1 1491350..1491628(+) (abrB) [Bacillus sp. TSA-4]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576