Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RU414_RS15730 Genome accession   NZ_CP136047
Coordinates   3156312..3156926 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CPO20180081     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3151312..3161926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RU414_RS15715 (RU414_15715) helD 3151536..3153590 (-) 2055 WP_054528243.1 DNA helicase IV -
  RU414_RS15720 (RU414_15720) - 3153716..3154162 (+) 447 WP_003035892.1 YccF domain-containing protein -
  RU414_RS15725 (RU414_15725) yccS 3154181..3156334 (+) 2154 WP_054528680.1 YccS family putative transporter -
  RU414_RS15730 (RU414_15730) sxy/tfoX 3156312..3156926 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  RU414_RS15735 (RU414_15735) sulA 3157144..3157653 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  RU414_RS15740 (RU414_15740) ompA 3158011..3159057 (+) 1047 WP_003035883.1 porin OmpA -
  RU414_RS15745 (RU414_15745) matP 3159146..3159598 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  RU414_RS15750 (RU414_15750) - 3159784..3161544 (+) 1761 WP_054528242.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=888342 RU414_RS15730 WP_003035889.1 3156312..3156926(-) (sxy/tfoX) [Citrobacter freundii strain CPO20180081]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=888342 RU414_RS15730 WP_003035889.1 3156312..3156926(-) (sxy/tfoX) [Citrobacter freundii strain CPO20180081]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686