Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RP299_RS09315 Genome accession   NZ_CP136013
Coordinates   1875817..1877625 (-) Length   602 a.a.
NCBI ID   WP_315943412.1    Uniprot ID   -
Organism   Lactobacillus johnsonii strain N5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1870817..1882625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP299_RS09290 (RP299_09290) - 1871229..1871426 (+) 198 Protein_1751 ArsR/SmtB family transcription factor -
  RP299_RS09295 (RP299_09295) - 1871727..1872626 (+) 900 WP_004898012.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  RP299_RS09300 (RP299_09300) - 1872665..1873324 (+) 660 WP_315943413.1 ATP-binding cassette domain-containing protein -
  RP299_RS09305 (RP299_09305) - 1873324..1874115 (+) 792 WP_011162511.1 metal ABC transporter permease -
  RP299_RS09310 (RP299_09310) - 1874236..1875747 (+) 1512 WP_004898009.1 L-lactate permease -
  RP299_RS09315 (RP299_09315) pepF 1875817..1877625 (-) 1809 WP_315943412.1 oligoendopeptidase F Regulator
  RP299_RS09320 (RP299_09320) - 1877789..1878913 (+) 1125 WP_315943411.1 LCP family protein -
  RP299_RS09325 (RP299_09325) - 1879018..1879290 (-) 273 WP_014567848.1 hypothetical protein -
  RP299_RS09330 (RP299_09330) - 1879514..1879897 (+) 384 WP_014567847.1 hypothetical protein -
  RP299_RS09335 (RP299_09335) - 1879897..1881444 (+) 1548 WP_014567846.1 ABC-F family ATP-binding cassette domain-containing protein -
  RP299_RS09340 (RP299_09340) - 1881461..1882243 (+) 783 WP_315943410.1 threonine/serine exporter family protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68607.26 Da        Isoelectric Point: 4.5875

>NTDB_id=888244 RP299_RS09315 WP_315943412.1 1875817..1877625(-) (pepF) [Lactobacillus johnsonii strain N5]
MAIPTRNEVSDDLKWDLSRVFKDDQEWEQEYNQVATEIKNLGRFKGNLAKSGQDLYEGITEILSVNRRLEKVYVYATMSS
DVDTSNTHYLGLVAKAQSLANQMSAAISFVDPEILSIPEETLAKFMQDEPRLKEYQHRLEQITKKRPHTLPASEEKIIAA
AGDAIGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNAQVHKYNSAREAALSENGVPTAVYDTLVKEVNSHLNLLHRYVSLRKKILGLSDLQMYDMYVPLTGEPSLSYNFEEA
KNEARRALAPLGKDYLEHVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTDEERTAYINFLKAGSSDY
PTEIMKRAGVDMTKADYLRDAFNTFEKRLNEFEKIVNELKTI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=888244 RP299_RS09315 WP_315943412.1 1875817..1877625(-) (pepF) [Lactobacillus johnsonii strain N5]
ATGGCTATTCCAACAAGAAATGAAGTATCTGATGATCTCAAATGGGATCTTAGTCGTGTTTTTAAAGACGATCAGGAATG
GGAACAAGAATATAATCAGGTCGCAACCGAAATTAAAAATTTAGGTAGATTTAAGGGAAATCTTGCTAAATCTGGTCAAG
ATTTATATGAAGGAATTACAGAAATTTTATCTGTAAATCGTCGTTTAGAAAAAGTGTACGTTTATGCTACTATGTCAAGC
GACGTTGATACTAGTAATACTCATTATCTAGGCCTCGTTGCTAAAGCTCAAAGCTTAGCTAACCAGATGAGCGCCGCTAT
CTCTTTTGTCGATCCTGAAATTTTATCTATCCCAGAAGAAACACTTGCTAAATTTATGCAAGATGAGCCCCGTTTAAAAG
AGTATCAACATCGACTTGAACAAATTACTAAGAAACGTCCTCATACTTTACCAGCAAGTGAAGAAAAAATTATTGCCGCT
GCTGGAGATGCAATAGGAACTTCCGCTAATACTTTCAATGTTTTAACTAATTCTGATATGGAATACGGCTATGTTCAAGA
TGAAGACGGAGAGATGGTCCAATTATCTGATGGCTTATATTCACTTCTAATTCAGTCACAAGATAGAAATGTTCGCAAAA
ATGCATTTGATGTTATGTATGCAAGCTATGGCCAGTTTGAAAATAGTCTCGCTTCAACTTTATCAGGTGAAGTAAAAGCC
CACAATTTTAATGCTCAAGTACATAAATATAATTCAGCTCGAGAGGCTGCTTTAAGTGAAAATGGCGTACCAACAGCTGT
TTACGATACATTGGTTAAAGAGGTAAATAGTCACCTCAACTTACTTCATCGCTACGTTAGTTTAAGAAAAAAGATTTTAG
GTCTTTCTGATTTACAAATGTATGATATGTATGTTCCATTAACAGGTGAGCCCAGTCTTTCTTATAACTTTGAAGAAGCA
AAAAATGAAGCTAGACGAGCCTTAGCGCCATTAGGAAAAGATTACCTCGAACATGTTGATTACATCTTTAATAATCGTGT
AATTGATGTGGTTGAAAGCCAAAATAAGGTAACAGGCGCTTATTCTGGTGGTTCCTATGATACTGATCCATATGAATTAT
TAAATTGGGAGGATAATCTTGATTCTCTATATACTCTAGTTCATGAAACTGGACACTCAGTGCATTCCTGGTATACAAGA
AATACTCAACCATATGTATATGGAGACTACCCAATTTTTGTTGCTGAAATTGCATCAACAACTAATGAAAATATTTTAAC
TGAATACTTCTTAGATAAAATTACCGATCCTAAAACACGCGCATTTGTTTTGAATCACTATCTTGATTCATTTAAAGGTA
CACTTTTCCGTCAAACACAATTTGCAGAATTTGAGCAGTTTATTCATGAAGCTGATGCAAATGGTCAACCATTAACTGCC
GATGTTCTTGATGAATTTTATGGCAATTTAAACCAAAGATATTACGGTGATAGTGTAGAACCGGGCGGAGAGATTGCTAA
AGAATGGGCCCGTATTCCTCACTTCTATTACAACTTCTATGTTTACCAATATGCAACAGGTTTTGCTGCTGCTACAGCCC
TTGCAAATAATGTTGTTCATGGTACGGACGAAGAACGTACAGCTTATATTAATTTCTTAAAGGCTGGTTCTTCAGATTAT
CCAACAGAAATAATGAAACGTGCCGGTGTCGATATGACAAAGGCTGATTACTTAAGAGACGCATTTAATACTTTTGAAAA
ACGACTTAATGAGTTTGAAAAAATCGTTAATGAACTGAAAACAATCTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.689

98.339

0.508