Detailed information NTG0088820

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OCU77_RS14535
• Genome accession: NZ_AP024852
• Coordinates: 3220975..3224361 (+)
• Length: 1128 a.a.
• NCBI ID: WP_048900342.1
• Uniprot ID: -
• Organism: Photobacterium swingsii strain CECT 7576
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 3215975..3229361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU77_RS14520	hemL	3216738..3218036 (+)	1299	WP_107303150.1	glutamate-1-semialdehyde 2,1-aminomutase	-
OCU77_RS14525	-	3218419..3219504 (+)	1086	WP_084711874.1	AI-2E family transporter	-
OCU77_RS14530	rsmC	3219611..3220630 (+)	1020	WP_048900317.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
OCU77_RS14535	chiS	3220975..3224361 (+)	3387	WP_048900342.1	response regulator	Regulator
OCU77_RS14540	-	3225197..3226876 (+)	1680	WP_048900316.1	ABC transporter substrate-binding protein	-
OCU77_RS14545	-	3227018..3228004 (+)	987	WP_048900315.1	ABC transporter permease	-
OCU77_RS14550	-	3228006..3229031 (+)	1026	WP_107303144.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 126648.74 Da
• Isoelectric Point: 5.6837

>NTDB_id=88820 OCU77_RS14535 WP_048900342.1 3220975..3224361(+) (chiS) [Photobacterium swingsii strain CECT 7576]
MKNTTQFKRLQNTLMIAFLVLSITPLTLSAMFFMNSHTKDLVEQSTTHLASLLENKKKQLNNFFIAKESEAKSFSRSELA
NASGGRFYGLVGAFHQLGELPSKLDDNNRSTYFTHTLTEKGKSVNSHSTNYIGHERYRLMYKRYHWAFEEYLKRSDFSDI
MLVDIKGNVVYSVNHPERFGIGLNDPRFADSALSNTFKAIKAQTRDIQGQPEQVPIAFTDFSLNQGETLQTAWFAAPVIQ
QGYLHSYVFFELNNDKISSLIADTTPTNNYVQTVLVGSDHQPRIPTTSNSSNTLNSESITQALEGNTGVGSFLNFSQTPV
LSAFSPINVLGNTWALVVELPEEEAFARIRQLEKIFLVAMITAIVLVIIASHLLSNSITAPLLRLTWAAERVSAGDLDQK
IEGIERSDEIGRLAVSFARMQRSVREKISLIRDQNTELEQNLTVIQQQNKELQVTDKLKDEFLATTSHELRTPLHGMVGI
AESLLAGANGPVQASQRRQLEMLINSGQRLTNLVDDLLDYHKMRYGDLDINKHAVDLSSATHLVLELSRHLVGSKPIRII
NQIPTDLPPVLADEQRLEQVLYNLIGNAIKYTSEGKIVLSAMVLENQIRVQVVDTGQGIPPEQLEHIFEPLIQANTGSAH
YRQGAGLGLSISRQLIELMGGRLYVSSQPMVGATFSFTLNLASEQDIADSKLGSSSHFKAPTLGVSSCKDEALPSNPDGE
LLLVVDDEPVNLQVLNNFLRLEGYQVLTAESGPQALSLMEQHQPALILLDIMMPEMSGYEVCQHLRQQYDLRELPIIMLS
ALGQVQDRVKGFEYGANDYLAKPFNKEELIARIGAHIQAGKTEQQRQQNQMLQQEIDRREQVEEGLLETQTRLMGLLEST
SEAIVCVQNEGRVRYANAAAGKLFKRAPEQLERHTIDDILMTHLPDDISQSHHFNGQLTFRIGDELKALDTDVINLPEES
GLKRMFIFDNVGPSAQHRISELESAIDVLSGFAFDGDRNNLQQLRELGGEFTRLADKLGSDNKDRGSIVRELLVDVMKTT
LSTWEETTQKTKFDLAEESGLWRVYLDRSTLQTRTLDKYLHVETLPKTPRWRTVLSTINFVMARCDEQSTAYQSLLVKRD
KLQHLITQ

Nucleotide

• Length: 3387 bp

>NTDB_id=88820 OCU77_RS14535 WP_048900342.1 3220975..3224361(+) (chiS) [Photobacterium swingsii strain CECT 7576]
ATGAAGAACACCACGCAGTTTAAGCGCCTCCAAAACACCTTAATGATCGCTTTTTTGGTGCTGAGTATTACGCCATTAAC
GCTTTCAGCGATGTTTTTCATGAATTCACACACCAAAGATTTGGTTGAGCAAAGTACAACTCACCTCGCGTCCTTACTCG
AGAATAAAAAGAAACAGCTCAATAACTTCTTTATTGCGAAAGAATCAGAAGCTAAGAGCTTTTCACGCTCCGAATTAGCG
AATGCCAGTGGCGGTCGATTTTATGGGTTAGTTGGCGCTTTTCATCAGCTTGGCGAGTTACCCAGTAAACTGGATGATAA
TAATCGCAGCACCTATTTCACCCATACGCTGACAGAAAAAGGCAAATCGGTGAATAGCCACAGCACCAACTACATAGGGC
ACGAGCGTTATCGTTTAATGTACAAACGCTACCATTGGGCGTTTGAAGAATACTTAAAACGATCTGATTTCAGTGACATT
ATGTTGGTCGATATCAAAGGCAATGTAGTGTACTCCGTCAATCATCCGGAGCGATTTGGTATAGGTCTCAATGACCCACG
ATTTGCTGACAGCGCACTCAGTAACACCTTCAAAGCAATTAAAGCACAAACCCGTGATATCCAAGGTCAGCCCGAGCAGG
TGCCGATTGCATTCACGGACTTTTCGCTAAACCAAGGTGAGACATTACAAACCGCCTGGTTTGCAGCCCCCGTTATCCAA
CAGGGCTATCTGCACAGTTACGTCTTTTTTGAACTCAATAATGACAAGATCAGCAGCCTTATTGCCGATACCACTCCAAC
AAACAACTATGTTCAAACCGTGCTTGTGGGCAGTGATCATCAGCCAAGGATCCCAACAACCAGCAATAGCAGTAACACAC
TCAATAGTGAAAGTATTACTCAAGCTCTCGAAGGCAATACAGGTGTCGGTAGCTTTTTAAACTTTAGTCAAACCCCGGTA
CTGAGTGCCTTTTCTCCGATCAATGTCCTCGGTAACACTTGGGCGTTAGTGGTTGAACTCCCAGAAGAAGAAGCCTTTGC
TCGGATCCGCCAGCTAGAAAAAATATTCTTAGTCGCAATGATCACCGCTATCGTATTGGTAATCATCGCATCACATTTAC
TTTCAAACTCGATTACCGCTCCACTGCTGCGACTGACTTGGGCGGCAGAACGCGTCTCGGCTGGTGATTTAGACCAAAAG
ATTGAAGGGATAGAGCGAAGTGATGAAATTGGCCGTCTTGCCGTTAGTTTTGCGCGTATGCAACGCTCGGTACGGGAAAA
AATCAGTCTTATTCGTGACCAAAATACAGAGTTAGAACAAAACTTGACTGTCATACAGCAACAAAACAAAGAACTCCAAG
TTACCGATAAACTTAAAGATGAATTTCTGGCAACTACCTCACATGAGCTGCGTACTCCTCTTCACGGTATGGTTGGCATT
GCGGAATCATTATTGGCGGGAGCCAACGGCCCGGTGCAAGCGTCACAACGTCGCCAGCTTGAAATGCTGATCAACAGCGG
TCAGCGCCTGACTAACTTAGTGGATGATCTCTTGGATTATCATAAGATGCGCTATGGCGATCTCGACATCAACAAACATG
CTGTCGATCTATCGTCTGCCACTCATCTCGTGCTTGAGCTATCGCGCCACTTGGTTGGCAGCAAACCGATTCGGATCATT
AACCAAATCCCGACAGATTTACCTCCAGTCTTAGCGGATGAACAGCGCCTAGAGCAAGTGCTGTATAACCTGATAGGTAA
TGCGATCAAATACACCTCAGAAGGTAAAATTGTCTTATCTGCTATGGTGCTCGAAAATCAAATTCGAGTGCAGGTCGTTG
ATACAGGACAAGGGATCCCTCCTGAGCAACTCGAACATATCTTTGAGCCGCTGATTCAAGCCAATACAGGCTCCGCACAC
TACCGTCAGGGAGCGGGATTAGGGCTATCCATCAGTCGCCAGTTAATTGAATTAATGGGCGGCCGTTTGTATGTCAGTAG
CCAGCCTATGGTAGGCGCAACGTTCAGCTTTACACTGAACCTTGCCAGCGAACAAGACATTGCCGACAGCAAGCTAGGTA
GCAGCAGCCACTTTAAAGCGCCAACATTAGGCGTATCGAGTTGCAAAGATGAAGCGCTACCAAGTAATCCTGATGGTGAA
TTATTGCTAGTTGTGGACGATGAACCCGTTAATCTACAAGTCCTGAACAACTTCTTGCGCCTTGAAGGCTATCAAGTCTT
AACGGCAGAAAGTGGCCCTCAAGCCTTATCGCTCATGGAACAACACCAGCCAGCATTAATTCTACTCGATATCATGATGC
CAGAAATGAGCGGCTATGAAGTGTGCCAGCATTTACGCCAACAATACGATTTACGAGAATTACCTATCATTATGCTCTCA
GCACTTGGACAAGTGCAGGATCGAGTAAAGGGCTTTGAATATGGCGCCAATGATTATTTAGCTAAGCCCTTTAATAAAGA
AGAATTAATTGCCCGTATTGGTGCCCATATTCAGGCAGGAAAAACTGAGCAGCAACGCCAGCAAAACCAAATGCTACAAC
AGGAAATTGACCGCAGAGAGCAAGTGGAAGAAGGCTTATTGGAAACTCAAACTCGCTTGATGGGTTTACTGGAATCCACC
AGCGAGGCCATTGTTTGTGTGCAAAATGAAGGCCGGGTACGTTACGCAAATGCAGCGGCAGGAAAGCTCTTTAAGCGAGC
ACCAGAGCAACTAGAGCGCCATACAATCGATGATATCTTAATGACGCACTTACCCGATGACATTAGCCAAAGCCATCATT
TCAACGGCCAACTCACCTTTAGAATTGGCGATGAGCTTAAAGCACTTGATACCGATGTGATTAACCTACCCGAAGAATCT
GGACTAAAAAGGATGTTTATCTTTGATAACGTCGGTCCTTCCGCTCAGCACCGAATTAGTGAACTAGAAAGCGCCATTGA
TGTGCTGTCAGGATTTGCCTTTGATGGCGATAGAAATAACCTGCAACAGCTGCGCGAACTCGGCGGTGAATTCACACGCT
TGGCCGATAAACTTGGTAGCGATAATAAAGATAGGGGCAGCATAGTACGGGAATTACTGGTAGATGTGATGAAAACAACC
CTTTCTACTTGGGAAGAAACAACACAAAAAACCAAGTTTGATCTGGCCGAAGAAAGTGGCTTATGGCGCGTCTACCTCGA
CCGTAGCACGCTTCAAACACGCACATTAGACAAATACTTACATGTTGAAACGCTACCCAAAACGCCACGTTGGCGCACGG
TACTGAGCACCATTAACTTTGTTATGGCACGCTGTGATGAACAGTCTACCGCTTACCAATCACTCTTAGTTAAACGCGAC
AAACTACAGCACCTTATTACTCAATAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (723-833)

• HAMP domain (HAMP) (373-425)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-681)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	57.156	99.734	0.57