Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RUT96_RS06235 Genome accession   NZ_CP135998
Coordinates   1323095..1324471 (+) Length   458 a.a.
NCBI ID   WP_003549080.1    Uniprot ID   Q5FM36
Organism   Lactobacillus acidophilus strain CICC6074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1318095..1329471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUT96_RS06205 (RUT96_06205) - 1318744..1318926 (+) 183 WP_003549074.1 hypothetical protein -
  RUT96_RS06210 (RUT96_06210) - 1318928..1319605 (+) 678 WP_021721658.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  RUT96_RS06215 (RUT96_06215) - 1319710..1320645 (+) 936 WP_003549076.1 AAA family ATPase -
  RUT96_RS06220 (RUT96_06220) pepC 1320696..1322045 (-) 1350 WP_003549077.1 aminopeptidase C -
  RUT96_RS06225 (RUT96_06225) - 1322116..1322412 (-) 297 WP_003549078.1 hypothetical protein -
  RUT96_RS06230 (RUT96_06230) - 1322544..1323095 (+) 552 WP_011254121.1 dUTP diphosphatase -
  RUT96_RS06235 (RUT96_06235) radA 1323095..1324471 (+) 1377 WP_003549080.1 DNA repair protein RadA Machinery gene
  RUT96_RS06240 (RUT96_06240) gltX 1324549..1326048 (+) 1500 WP_003549081.1 glutamate--tRNA ligase -
  RUT96_RS06245 (RUT96_06245) cysS 1326146..1327579 (+) 1434 WP_003549082.1 cysteine--tRNA ligase -
  RUT96_RS06250 (RUT96_06250) - 1327572..1328015 (+) 444 WP_003549083.1 Mini-ribonuclease 3 -
  RUT96_RS06255 (RUT96_06255) rlmB 1328002..1328754 (+) 753 WP_011254123.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RUT96_RS06260 (RUT96_06260) - 1328894..1329430 (+) 537 WP_011254124.1 DNA-directed RNA polymerase subunit sigma -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50253.83 Da        Isoelectric Point: 6.9044

>NTDB_id=888181 RUT96_RS06235 WP_003549080.1 1323095..1324471(+) (radA) [Lactobacillus acidophilus strain CICC6074]
MARVKTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGVNEPVKLDKIKAEKEERISTKSE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSDLAEKHKVLYVSGEESANQIKLRADRLGIGQSNMLLYPESDMHDI
REQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKIMEHMVDTVLY
FEGDEHHTYRILHSVKNRFGAANEIGMFEMVNEGLKEVTNPSAIFLDQRLPNSTGSAVVVSLEGTRPLLAEIQALVTPTA
FGYAKRTTSGIDYNRAALLLAVLEKRGNLMLQNQDVYLTATGGIKLNEPAIDLAIAMSVASSYTDKEISPTDCFVGEVGL
TGEIRRVDKIEARVKEAAKVGFKRIFIPKHNMYQGLTNNGIEVIPVSSIPQALKLVFN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=888181 RUT96_RS06235 WP_003549080.1 1323095..1324471(+) (radA) [Lactobacillus acidophilus strain CICC6074]
ATGGCAAGGGTAAAAACTCAATATAAATGTCGCTCCTGTGGTTACATTTCTGCTAGTTATTTAGGTAGATGTCCTAACTG
TGGAGCATGGAATCAATTTGAAAAAGAAACTGAAGAAGTACAAAAACGTTCAACAAAAGCTACAGCTAGCCGTTTAATCC
AAAAAACTGGCGTAAATGAACCAGTAAAGCTAGATAAAATTAAAGCGGAAAAAGAAGAGAGAATTTCTACTAAATCAGAA
GAATTAAATCGTGTTTTAGGTGGCGGAATTGTACCTGGATCGCTTGTATTAATCGGTGGAGATCCTGGAATTGGTAAATC
AACTTTAATGTTGCAAATTATGAGTGATTTGGCAGAAAAGCATAAAGTATTATACGTTTCCGGAGAAGAATCAGCTAATC
AAATTAAGCTAAGAGCTGATCGGTTAGGAATCGGACAGAGTAACATGCTTTTATATCCTGAAAGTGATATGCATGATATT
CGTGAACAAATTAATGATGTTAAACCTGATTTTGTAGTTATTGATTCAATTCAAACAATGAATGAACCTAGCTTAGATTC
TATGACAGGTTCTGCCTCACAGGTTCGTGAAGTAACTAGTGAATTGATGAAAATCGCAAAAATGGATGCAATTACTGTTT
TTGTAATTGGACATGTAACTAAAGAGGGTGCAATTGCGGGACCTAAAATTATGGAACATATGGTAGATACTGTTCTATAT
TTTGAAGGGGATGAGCACCATACTTATAGAATTTTACATTCTGTGAAAAATCGTTTTGGTGCTGCTAATGAAATTGGCAT
GTTTGAAATGGTGAATGAAGGGTTAAAAGAAGTAACTAATCCGTCAGCTATTTTTCTTGATCAAAGATTACCAAATTCGA
CTGGTTCAGCAGTAGTTGTTTCTTTGGAAGGAACACGCCCGCTTTTGGCAGAAATTCAGGCTTTGGTTACGCCAACGGCA
TTTGGTTATGCAAAAAGAACAACGTCAGGGATTGATTATAATAGGGCTGCTCTTTTACTGGCAGTACTTGAAAAGCGTGG
TAATTTGATGTTGCAAAACCAAGATGTATATTTGACTGCTACTGGTGGGATTAAGTTGAATGAGCCTGCGATTGATTTGG
CGATTGCAATGTCTGTTGCATCTAGTTATACAGACAAAGAAATTTCACCAACTGATTGTTTTGTAGGTGAAGTAGGTTTA
ACGGGAGAAATCCGTAGAGTAGATAAAATTGAAGCTAGAGTAAAAGAAGCTGCTAAAGTTGGTTTTAAGCGAATTTTTAT
TCCTAAACACAATATGTATCAAGGATTAACTAATAACGGAATAGAAGTTATTCCAGTTTCAAGCATTCCGCAAGCGTTAA
AATTAGTTTTTAATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-431)

AAA domain (AAA_25)

(66-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5FM36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

57.549

99.782

0.574
  radA Streptococcus pneumoniae D39

57.549

99.782

0.574
  radA Streptococcus pneumoniae R6

57.549

99.782

0.574
  radA Streptococcus pneumoniae TIGR4

57.549

99.782

0.574
  radA Streptococcus mitis NCTC 12261

57.549

99.782

0.574
  radA Streptococcus mitis SK321

57.549

99.782

0.574
  radA Bacillus subtilis subsp. subtilis str. 168

56.264

99.345

0.559