Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RS399_RS20810 Genome accession   NZ_CP135973
Coordinates   4087247..4087867 (-) Length   206 a.a.
NCBI ID   WP_004398007.1    Uniprot ID   A0A9W5LEN4
Organism   Bacillus inaquosorum strain SI3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4082247..4092867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS20790 (RS399_20790) dnaD 4082531..4083229 (+) 699 WP_004398016.1 DNA replication protein DnaD -
  RS399_RS20795 (RS399_20795) nth 4083248..4083907 (+) 660 WP_003225594.1 endonuclease III -
  RS399_RS20800 (RS399_20800) - 4083904..4084398 (+) 495 WP_084992008.1 YpoC family protein -
  RS399_RS20805 (RS399_20805) - 4084471..4087224 (-) 2754 WP_084992006.1 PBP1A family penicillin-binding protein -
  RS399_RS20810 (RS399_20810) recU 4087247..4087867 (-) 621 WP_004398007.1 Holliday junction resolvase RecU Machinery gene
  RS399_RS20815 (RS399_20815) - 4087908..4088870 (+) 963 WP_084992004.1 DUF2515 domain-containing protein -
  RS399_RS20820 (RS399_20820) sspM 4088895..4088999 (-) 105 WP_024715286.1 acid-soluble spore protein SspM -
  RS399_RS20825 (RS399_20825) - 4089198..4089443 (+) 246 WP_004398004.1 DUF5446 family protein -
  RS399_RS20830 (RS399_20830) - 4089489..4089860 (+) 372 WP_019258731.1 YppE family protein -
  RS399_RS20835 (RS399_20835) - 4089899..4090087 (-) 189 WP_003225611.1 YppF family protein -
  RS399_RS20840 (RS399_20840) - 4090274..4090642 (+) 369 WP_019258730.1 YppG family protein -
  RS399_RS20845 (RS399_20845) - 4090663..4091082 (-) 420 WP_315957523.1 Hsp20/alpha crystallin family protein -
  RS399_RS20850 (RS399_20850) - 4091220..4091726 (+) 507 WP_084992048.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=888060 RS399_RS20810 WP_004398007.1 4087247..4087867(-) (recU) [Bacillus inaquosorum strain SI3]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=888060 RS399_RS20810 WP_004398007.1 4087247..4087867(-) (recU) [Bacillus inaquosorum strain SI3]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
ATACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTCA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTATAACGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTCTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTAGAGGAAGCTGCGTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCTTCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.029

100

0.99