Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RS399_RS19290 Genome accession   NZ_CP135973
Coordinates   3820584..3821351 (+) Length   255 a.a.
NCBI ID   WP_084993679.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3815584..3826351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS19260 (RS399_19260) pgpH 3815884..3818019 (+) 2136 WP_084993675.1 cyclic-di-AMP phosphodiesterase PgpH -
  RS399_RS19265 (RS399_19265) ybeY 3818020..3818493 (+) 474 WP_003237071.1 rRNA maturation RNase YbeY -
  RS399_RS19270 (RS399_19270) - 3818474..3818845 (+) 372 WP_003237069.1 diacylglycerol kinase family protein -
  RS399_RS19275 (RS399_19275) - 3818966..3819376 (+) 411 WP_084993677.1 cytidine deaminase -
  RS399_RS19280 (RS399_19280) era 3819357..3820262 (+) 906 WP_003226207.1 GTPase Era -
  RS399_RS19285 (RS399_19285) - 3820404..3820547 (+) 144 WP_003230053.1 YqzL family protein -
  RS399_RS19290 (RS399_19290) recO 3820584..3821351 (+) 768 WP_084993679.1 DNA repair protein RecO Machinery gene
  RS399_RS19295 (RS399_19295) glyQ 3821649..3822536 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  RS399_RS19300 (RS399_19300) glyS 3822529..3824568 (+) 2040 WP_084993681.1 glycine--tRNA ligase subunit beta -
  RS399_RS19305 (RS399_19305) ccpN 3824702..3825340 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  RS399_RS19310 (RS399_19310) - 3825366..3826178 (+) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29385.16 Da        Isoelectric Point: 8.5618

>NTDB_id=888048 RS399_RS19290 WP_084993679.1 3820584..3821351(+) (recO) [Bacillus inaquosorum strain SI3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPFLFEFILESFKQLNEGTDPDVIIFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=888048 RS399_RS19290 WP_084993679.1 3820584..3821351(+) (recO) [Bacillus inaquosorum strain SI3]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAACGATTACGGAGAGACGAATAAAATCGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCAAGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCTTTTT
TGTATGGTTCATTCTTAATGCAAAAAACAACGGGCCTCGGAACGCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCGTATATTGCTGAGCTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTTCTTGTTTGAATTCATTTTAGAATCGTTTAAACAGCTGAATGAAGGAACAGATCCGGATGTCATCATCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGGCTGTATCCCGAGCTGAATCACTGTGTGCATTGTAAAAGCCAGGACGGG
ACATTTCATTTCTCTGTCCGTGATAACGGGTTTATTTGCCATCGTTGTTTTGAAAAAGATCCTTACAGGATTCCGATTAA
ACCGCAAACGGCAAGGCTGTTGAGGCTGTTTTATTACTTCGATCTGTCGAGGCTGGGCAATGTGTCCTTAAAACAGGAAA
CAAAAGCTGAATTGAAGCAAGTGATTGATTTATATTATGAGGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

97.647

100

0.976