Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RS399_RS19040 Genome accession   NZ_CP135973
Coordinates   3777401..3777811 (+) Length   136 a.a.
NCBI ID   WP_084993633.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3772401..3782811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS19010 (RS399_19010) - 3772637..3773413 (+) 777 WP_084995742.1 sulfite exporter TauE/SafE family protein -
  RS399_RS19015 (RS399_19015) - 3773679..3774533 (-) 855 WP_084995746.1 ferritin family protein -
  RS399_RS19020 (RS399_19020) - 3774735..3775445 (+) 711 WP_084995744.1 DUF421 domain-containing protein -
  RS399_RS19025 (RS399_19025) - 3776049..3776227 (+) 179 Protein_3691 hypothetical protein -
  RS399_RS19030 (RS399_19030) - 3776185..3776357 (+) 173 Protein_3692 recombinase family protein -
  RS399_RS19035 (RS399_19035) sigK 3776478..3777206 (-) 729 WP_003237137.1 RNA polymerase sporulation sigma factor SigK -
  RS399_RS19040 (RS399_19040) nucA/comI 3777401..3777811 (+) 411 WP_084993633.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RS399_RS19045 (RS399_19045) - 3777844..3778566 (-) 723 WP_084993893.1 hypothetical protein -
  RS399_RS19050 (RS399_19050) gnd 3778882..3779775 (+) 894 WP_084993635.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  RS399_RS19055 (RS399_19055) - 3779794..3780420 (-) 627 WP_084993636.1 TVP38/TMEM64 family protein -
  RS399_RS19060 (RS399_19060) - 3780615..3781367 (+) 753 WP_084993638.1 N-acetylmuramoyl-L-alanine amidase -
  RS399_RS19065 (RS399_19065) - 3781619..3782350 (+) 732 WP_019258944.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14979.02 Da        Isoelectric Point: 5.2038

>NTDB_id=888044 RS399_RS19040 WP_084993633.1 3777401..3777811(+) (nucA/comI) [Bacillus inaquosorum strain SI3]
MKKWMAGLLLAAAVFLCLVVPQPIKSASLYDKVLYFPLSRYPETGDHIRDAITEGHSDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSGYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=888044 RS399_RS19040 WP_084993633.1 3777401..3777811(+) (nucA/comI) [Bacillus inaquosorum strain SI3]
ATGAAAAAATGGATGGCAGGCCTGCTTCTTGCTGCAGCAGTTTTTCTTTGTTTAGTGGTTCCGCAGCCGATCAAGAGCGC
TTCTTTGTATGACAAAGTGTTGTATTTTCCGCTGTCTCGTTATCCGGAAACAGGGGATCATATTAGAGATGCGATTACAG
AGGGACATTCTGATATTTGTACCATCGACAGGGATGGAGCGGACAAAAGGCGAGAGGAATCATTAAAAGGAATTCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCAATGGCGGTTTGCGAGGAAGGCGGCGCAGGAGCTGACGTCCGATATGTGAC
GCCTTCTGATAATCGCGGGGCCGGCTCGTGGGTAGGGAATCAAATGAGTGGTTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.478

84.559

0.537