Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RS399_RS18035 Genome accession   NZ_CP135973
Coordinates   3602166..3602912 (+) Length   248 a.a.
NCBI ID   WP_168767830.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3597166..3607912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS18020 (RS399_18020) - 3597392..3597583 (-) 192 WP_003222590.1 hypothetical protein -
  RS399_RS18025 (RS399_18025) valS 3598031..3600673 (+) 2643 WP_084994817.1 valine--tRNA ligase -
  RS399_RS18030 (RS399_18030) - 3600733..3602025 (+) 1293 WP_084994814.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  RS399_RS18035 (RS399_18035) comC 3602166..3602912 (+) 747 WP_168767830.1 A24 family peptidase Machinery gene
  RS399_RS18040 (RS399_18040) - 3603046..3604044 (+) 999 WP_084994811.1 SPOR domain-containing protein -
  RS399_RS18045 (RS399_18045) - 3604196..3604765 (+) 570 WP_084994808.1 Maf family nucleotide pyrophosphatase -
  RS399_RS18050 (RS399_18050) radC 3604802..3605497 (+) 696 WP_003237576.1 DNA repair protein RadC -
  RS399_RS18055 (RS399_18055) mreB 3605589..3606602 (+) 1014 WP_003237574.1 cell shape-determining protein MreB -
  RS399_RS18060 (RS399_18060) mreC 3606633..3607505 (+) 873 WP_003237571.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26421.07 Da        Isoelectric Point: 9.6195

>NTDB_id=888040 RS399_RS18035 WP_168767830.1 3602166..3602912(+) (comC) [Bacillus inaquosorum strain SI3]
MLPILFILGLMLGSFYYTAGCRIPLHISIITPRSACSFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPVAELVTA
CLFAAAGIRFGPSPELLPALVFISLLIIVAVTDIHFMLIPNWILIFFVPVLAAARLISPLDSWYAGLLGASAGFLFLGII
GVITHGGIGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=888040 RS399_RS18035 WP_168767830.1 3602166..3602912(+) (comC) [Bacillus inaquosorum strain SI3]
ATGCTTCCCATTCTCTTTATCCTCGGGCTTATGCTTGGTTCATTTTATTATACGGCCGGGTGCCGTATCCCCTTACATAT
ATCTATTATCACGCCCCGTTCGGCATGCTCGTTTTGCCGGCGGACATTAACCCCGGCAGAATTAATCCCCATCCTGTCAT
TCCTTTTCCAAAAAGGCAAATGTAAAAGCTGCGGGCACAGAATTTCTTTTATGTATCCTGTGGCAGAGCTTGTGACAGCG
TGTTTATTTGCGGCAGCAGGAATACGCTTTGGCCCGTCTCCGGAACTGCTTCCCGCTCTCGTGTTTATCTCTCTTCTCAT
CATCGTTGCAGTGACAGATATTCATTTTATGCTGATACCAAATTGGATATTAATTTTCTTTGTTCCCGTTTTGGCCGCTG
CAAGATTGATTTCTCCGCTTGATTCCTGGTATGCCGGTCTGTTAGGTGCATCTGCCGGATTTCTTTTCCTGGGGATAATT
GGCGTAATCACCCATGGGGGAATAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTACTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAGCTGTCCTGACTGGAAGACTCGCCA
AAAGACAGCCGCTTCCCTTTGCCCCTGCCATTGCTGCTGGGAGCATTTTAGCTTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(100-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

91.532

100

0.915