Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   RS399_RS10960 Genome accession   NZ_CP135973
Coordinates   2209745..2210857 (-) Length   370 a.a.
NCBI ID   WP_019257226.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2204745..2215857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS10945 (RS399_10945) gyrA 2204837..2207302 (-) 2466 WP_019257227.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  RS399_RS10950 (RS399_10950) gyrB 2207512..2209428 (-) 1917 WP_003236659.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  RS399_RS10955 (RS399_10955) remB 2209482..2209727 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  RS399_RS10960 (RS399_10960) recF 2209745..2210857 (-) 1113 WP_019257226.1 DNA replication/repair protein RecF Machinery gene
  RS399_RS10965 (RS399_10965) rlbA 2210873..2211088 (-) 216 WP_003236655.1 ribosome maturation protein RlbA -
  RS399_RS10970 (RS399_10970) dnaN 2211220..2212356 (-) 1137 WP_084992274.1 DNA polymerase III subunit beta -
  RS399_RS10975 (RS399_10975) dnaA 2212545..2213885 (-) 1341 WP_003236652.1 chromosomal replication initiator protein DnaA -
  RS399_RS10980 (RS399_10980) rpmH 2214512..2214646 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  RS399_RS10985 (RS399_10985) rnpA 2214799..2215149 (+) 351 WP_003236647.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42360.36 Da        Isoelectric Point: 7.0881

>NTDB_id=888018 RS399_RS10960 WP_019257226.1 2209745..2210857(-) (recF) [Bacillus inaquosorum strain SI3]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=888018 RS399_RS10960 WP_019257226.1 2209745..2210857(-) (recF) [Bacillus inaquosorum strain SI3]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCCGAACTGCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAAACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATCATGTTCGCGCCGGAAGACTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCTGTTTACCTGTATGACCTTTCTCTTTACCAGAAAATCCTTTCTCAGCGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACGATGCTCGATGTTTTGACCGATCAGCTTGTGGA
AGTTGCGGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAAAAATGGGCGCAGCCAATTCATGCGGGCA
TCTCAAGAGGGTTAGAAGAGCTGACCCTAAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATCGAGCGCGGTGTTACGCTGTCAGGGCCTCATCG
TGACGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCATTGT
CCCTTAAGCTGGCGGAAATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAGCTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.189

100

0.992