Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RS399_RS10735 Genome accession   NZ_CP135973
Coordinates   2169089..2169379 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus inaquosorum strain SI3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2164089..2174379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS10720 (RS399_10720) - 2164285..2165598 (-) 1314 WP_084993275.1 ubiquitin-like domain-containing protein -
  RS399_RS10725 (RS399_10725) - 2165754..2166521 (-) 768 WP_084993276.1 TatD family hydrolase -
  RS399_RS10730 (RS399_10730) metG 2166600..2168594 (-) 1995 WP_084993277.1 methionine--tRNA ligase -
  RS399_RS10735 (RS399_10735) abrB 2169089..2169379 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  RS399_RS10740 (RS399_10740) rsmI 2169428..2170306 (-) 879 WP_084993279.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RS399_RS10745 (RS399_10745) - 2170281..2170580 (-) 300 WP_003242154.1 GIY-YIG nuclease family protein -
  RS399_RS10750 (RS399_10750) - 2170567..2171310 (-) 744 WP_060397761.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RS399_RS10755 (RS399_10755) yabA 2171369..2171728 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  RS399_RS10760 (RS399_10760) ricT 2171743..2172570 (-) 828 WP_003242158.1 competence/sporulation regulator complex protein RicT -
  RS399_RS10765 (RS399_10765) holB 2172573..2173562 (-) 990 WP_084993281.1 DNA polymerase III subunit delta' -
  RS399_RS10770 (RS399_10770) - 2173574..2174014 (-) 441 WP_003242162.1 YaaR family protein -
  RS399_RS10775 (RS399_10775) darA 2174027..2174356 (-) 330 WP_003218295.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=888016 RS399_RS10735 WP_003226760.1 2169089..2169379(+) (abrB) [Bacillus inaquosorum strain SI3]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=888016 RS399_RS10735 WP_003226760.1 2169089..2169379(+) (abrB) [Bacillus inaquosorum strain SI3]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAGTTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1