Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RS399_RS09020 Genome accession   NZ_CP135973
Coordinates   1842443..1842892 (+) Length   149 a.a.
NCBI ID   WP_119913722.1    Uniprot ID   A0A9Q4HSH3
Organism   Bacillus inaquosorum strain SI3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1837443..1847892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS09000 (RS399_09000) hxlR 1838643..1839005 (-) 363 WP_003241118.1 transcriptional activator HxlR -
  RS399_RS09005 (RS399_09005) hxlA 1839237..1839869 (+) 633 WP_084993055.1 3-hexulose-6-phosphate synthase -
  RS399_RS09010 (RS399_09010) hxlB 1839875..1840432 (+) 558 WP_084993058.1 6-phospho-3-hexuloisomerase -
  RS399_RS09015 (RS399_09015) tlpC 1840544..1842268 (+) 1725 WP_084993060.1 methyl-accepting chemotaxis protein TlpC -
  RS399_RS09020 (RS399_09020) nucA/comI 1842443..1842892 (+) 450 WP_119913722.1 DNA-entry nuclease Machinery gene
  RS399_RS09025 (RS399_09025) nin/comJ 1842919..1843317 (+) 399 WP_084993062.1 DNA-entry nuclease inhibitor Regulator
  RS399_RS09030 (RS399_09030) bglC 1843354..1844787 (-) 1434 WP_084993063.1 6-phospho-beta-glucosidase -
  RS399_RS09035 (RS399_09035) - 1844939..1845271 (-) 333 WP_019257436.1 YckD family protein -
  RS399_RS09040 (RS399_09040) - 1845354..1845809 (-) 456 WP_019257435.1 RDD family protein -
  RS399_RS22255 - 1845822..1845956 (-) 135 Protein_1773 formaldehyde dehydrogenase -
  RS399_RS09045 (RS399_09045) - 1846190..1847053 (+) 864 WP_019257433.1 transporter substrate-binding domain-containing protein -
  RS399_RS09050 (RS399_09050) - 1847063..1847743 (+) 681 WP_019257432.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16455.42 Da        Isoelectric Point: 4.4321

>NTDB_id=888011 RS399_RS09020 WP_119913722.1 1842443..1842892(+) (nucA/comI) [Bacillus inaquosorum strain SI3]
MNITMDIIKTILLVIVVIAAAAVSLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=888011 RS399_RS09020 WP_119913722.1 1842443..1842892(+) (nucA/comI) [Bacillus inaquosorum strain SI3]
GTGAACATCACGATGGACATCATAAAAACGATACTTCTCGTCATCGTCGTCATAGCAGCTGCAGCTGTCAGCCTGATAAA
GGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGACGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCAAAACATATAAAGGATGCGATAAATGAGGGGCACTCAGATGTGTGTACCATCGACAGGGACGGAGCT
GAGGAACGCCGTGAGCAATCATTAAAAGACGTACCGCCTAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATATATTTCTCCCGCTGACAACCGCGGTGCAGGTTCTTGGGTCGGGCATC
AGCTTACCGATTACCCTGACGGCACAAAGGTTTTATTCACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

94.631

100

0.946