Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RS399_RS04960 Genome accession   NZ_CP135973
Coordinates   962591..963169 (-) Length   192 a.a.
NCBI ID   WP_084991662.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 957591..968169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS04930 (RS399_04930) - 958103..958726 (-) 624 WP_003239430.1 TVP38/TMEM64 family protein -
  RS399_RS04935 (RS399_04935) - 958880..959242 (+) 363 WP_084991657.1 hypothetical protein -
  RS399_RS04940 (RS399_04940) - 959461..959661 (+) 201 WP_019257983.1 DUF3311 domain-containing protein -
  RS399_RS04945 (RS399_04945) - 959658..961127 (+) 1470 WP_084991659.1 sodium:solute symporter -
  RS399_RS04950 (RS399_04950) - 961170..961439 (-) 270 WP_019713871.1 excalibur calcium-binding domain-containing protein -
  RS399_RS04955 (RS399_04955) - 961646..962545 (+) 900 WP_084991661.1 SDR family oxidoreductase -
  RS399_RS04960 (RS399_04960) comK 962591..963169 (-) 579 WP_084991662.1 competence transcription factor ComK Regulator
  RS399_RS04965 (RS399_04965) - 963462..963695 (+) 234 WP_003239440.1 IDEAL domain-containing protein -
  RS399_RS04970 (RS399_04970) - 963722..964579 (-) 858 WP_084991664.1 SDR family oxidoreductase -
  RS399_RS04975 (RS399_04975) - 964691..966220 (+) 1530 WP_084991666.1 FAD-dependent oxidoreductase -
  RS399_RS22230 hemAT 966477..966854 (+) 378 Protein_995 heme-based aerotactic transducer HemAT -
  RS399_RS22235 - 966861..967658 (+) 798 WP_390874565.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22492.80 Da        Isoelectric Point: 7.6596

>NTDB_id=888000 RS399_RS04960 WP_084991662.1 962591..963169(-) (comK) [Bacillus inaquosorum strain SI3]
MSQKTDAPLESYEVNGATFAVLPEEIDGKIYSKIIEKDCVFYVCMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=888000 RS399_RS04960 WP_084991662.1 962591..963169(-) (comK) [Bacillus inaquosorum strain SI3]
ATGAGTCAGAAAACTGACGCACCTTTAGAATCGTATGAAGTAAACGGCGCAACATTTGCCGTGCTGCCAGAAGAAATCGA
CGGCAAAATCTATTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCTGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGGTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAACGGCAAAACGATGGAGCTGC
CGATCTCCTGCAATTCGTTCGAAAACCAGGTTTACCGGACAGCATGGCTCAGAACCAAATTCCAGGACAGAATCGAACAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969