Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   RS399_RS04530 Genome accession   NZ_CP135973
Coordinates   879118..880071 (-) Length   317 a.a.
NCBI ID   WP_168767789.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 874118..885071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS04500 (RS399_04500) appD 874251..875237 (-) 987 WP_003239306.1 oligopeptide ABC transporter ATP-binding protein AppD -
  RS399_RS04505 (RS399_04505) - 875426..876211 (-) 786 WP_084991551.1 DUF2268 domain-containing protein -
  RS399_RS04510 (RS399_04510) fabF 876288..877529 (-) 1242 WP_100274989.1 beta-ketoacyl-ACP synthase II -
  RS399_RS04515 (RS399_04515) fabH 877552..878490 (-) 939 WP_019258049.1 beta-ketoacyl-ACP synthase III -
  RS399_RS04520 (RS399_04520) - 878655..878882 (+) 228 WP_080010764.1 hypothetical protein -
  RS399_RS04525 (RS399_04525) comZ 878912..879103 (-) 192 WP_084991553.1 ComG operon transcriptional repressor ComZ Regulator
  RS399_RS04530 (RS399_04530) med 879118..880071 (-) 954 WP_168767789.1 transcriptional regulator Med Regulator
  RS399_RS04535 (RS399_04535) - 880162..880719 (-) 558 WP_084991557.1 hypothetical protein -
  RS399_RS04540 (RS399_04540) - 880801..881535 (-) 735 WP_084991559.1 hypothetical protein -
  RS399_RS04545 (RS399_04545) - 881787..881972 (+) 186 WP_003224551.1 YjzD family protein -
  RS399_RS04550 (RS399_04550) - 882018..882197 (-) 180 WP_003239319.1 YjzC family protein -
  RS399_RS04555 (RS399_04555) argF 882283..883243 (-) 961 Protein_910 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35343.82 Da        Isoelectric Point: 4.5558

>NTDB_id=887997 RS399_RS04530 WP_168767789.1 879118..880071(-) (med) [Bacillus inaquosorum strain SI3]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTDEDIINTIED
FHKRGVNLLYGHGSEYAEVFNLVSEDYPDMEFVISNAEAKGDNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDSTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLKTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=887997 RS399_RS04530 WP_168767789.1 879118..880071(-) (med) [Bacillus inaquosorum strain SI3]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCAAAATACAATGTGGACGTCTACTATAAAGAAGGCGTTAAAACAGATGAAGATATCATAAATACGATTGAGGAT
TTTCATAAGCGGGGCGTCAACCTTCTCTATGGCCATGGAAGTGAATATGCAGAGGTATTTAACTTGGTCAGCGAAGATTA
TCCAGATATGGAATTTGTCATTTCTAATGCGGAAGCGAAAGGTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAA
TGGGCTTTTTTGGAGGAATGACAGCTGCCCATATGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAG
CCAGAGGTTGACGGTTTTATCAAAGGTGCCAAATATGAAAACCCTGATATAGAAGTAAACACGAAATATACGGATCATTG
GGATGATGATTCGACGGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGCCTTTATGCCATTGGCTATGTCACAGATCAATCAGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATCGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGAGATCATTACTACGACCTGAAAACGGGAGTTGTTGAAATGGGAACATTCAGTCCGCTTGTCGATA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACGTACAACAAAACAGGCGAACTGCCAAAAAATGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

97.476

100

0.975