Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RS399_RS02045 Genome accession   NZ_CP135973
Coordinates   427984..428262 (-) Length   92 a.a.
NCBI ID   WP_003238863.1    Uniprot ID   A0A9Q4EYY4
Organism   Bacillus inaquosorum strain SI3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 422984..433262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS02025 (RS399_02025) ade 423037..424770 (-) 1734 WP_088110986.1 adenine deaminase -
  RS399_RS02030 (RS399_02030) ktrC 424927..425592 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  RS399_RS02035 (RS399_02035) - 425624..426490 (-) 867 WP_084992614.1 gamma-glutamylcyclotransferase -
  RS399_RS02040 (RS399_02040) kinC 426506..427792 (-) 1287 WP_084992616.1 two-component sensor histidine kinase KinC -
  RS399_RS02045 (RS399_02045) abrB 427984..428262 (-) 279 WP_003238863.1 transcriptional regulator AbhA Regulator
  RS399_RS02050 (RS399_02050) mreBH 428545..429552 (+) 1008 WP_029316824.1 cell shape-determining protein MreBH -
  RS399_RS02055 (RS399_02055) - 429653..429787 (+) 135 WP_003238865.1 protein YkpC -
  RS399_RS02060 (RS399_02060) - 429899..431131 (+) 1233 WP_084992618.1 aminopeptidase -
  RS399_RS02065 (RS399_02065) - 431160..432071 (-) 912 WP_084992620.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=887986 RS399_RS02045 WP_003238863.1 427984..428262(-) (abrB) [Bacillus inaquosorum strain SI3]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSDNKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=887986 RS399_RS02045 WP_003238863.1 427984..428262(-) (abrB) [Bacillus inaquosorum strain SI3]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAATTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGTATTGAATTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGTGTTT
GTTTAATGACCGGAGAAATCACTTCAGATAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCAGAAGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

59.341

98.913

0.587