Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   RO483_RS13860 Genome accession   NZ_CP135968
Coordinates   2986933..2987448 (-) Length   171 a.a.
NCBI ID   WP_005382766.1    Uniprot ID   A0A2I3CBC3
Organism   Vibrio alginolyticus strain S10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2981933..2992448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO483_RS13845 (RO483_13845) aroB 2983332..2984432 (-) 1101 WP_005381318.1 3-dehydroquinate synthase -
  RO483_RS13850 (RO483_13850) aroK 2984465..2984983 (-) 519 WP_005381319.1 shikimate kinase AroK -
  RO483_RS13855 (RO483_13855) pilQ 2985171..2986907 (-) 1737 WP_315956623.1 type IV pilus secretin PilQ family protein Machinery gene
  RO483_RS13860 (RO483_13860) pilP 2986933..2987448 (-) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  RO483_RS13865 (RO483_13865) pilO 2987438..2988031 (-) 594 WP_054577258.1 type 4a pilus biogenesis protein PilO Machinery gene
  RO483_RS13870 (RO483_13870) pilN 2988024..2988599 (-) 576 WP_054577259.1 PilN domain-containing protein Machinery gene
  RO483_RS13875 (RO483_13875) pilM 2988583..2989599 (-) 1017 WP_017821733.1 type IV pilus biogenesis protein PilM Machinery gene
  RO483_RS13880 (RO483_13880) - 2989744..2992305 (+) 2562 WP_025768081.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19065.24 Da        Isoelectric Point: 10.4342

>NTDB_id=887937 RO483_RS13860 WP_005382766.1 2986933..2987448(-) (pilP) [Vibrio alginolyticus strain S10]
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=887937 RO483_RS13860 WP_005382766.1 2986933..2987448(-) (pilP) [Vibrio alginolyticus strain S10]
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGCTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAGTATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTGCACCCTTTGAATTGCCCAAAGAAGCCACCATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGAAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGGGTCAT
GGGCATGGATAACACGGTTTCTGGCCTCGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCCGGGTCAATACCTTG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTATTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGATGT
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

84.795

100

0.848
  pilP Vibrio cholerae strain A1552

56.977

100

0.573