Detailed information NTG0887930

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RO483_RS12730
• Genome accession: NZ_CP135968
• Coordinates: 2760068..2761054 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain S10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2755068..2766054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RO483_RS12715 (RO483_12715)	recA	2755613..2756656 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
RO483_RS12720 (RO483_12720)	pncC	2756857..2757339 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
RO483_RS12725 (RO483_12725)	mutS	2757424..2759985 (+)	2562	WP_315956581.1	DNA mismatch repair protein MutS	-
RO483_RS12730 (RO483_12730)	rpoS	2760068..2761054 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
RO483_RS12735 (RO483_12735)	-	2761135..2762058 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
RO483_RS12740 (RO483_12740)	-	2762072..2762698 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
RO483_RS12745 (RO483_12745)	surE	2762698..2763474 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
RO483_RS12750 (RO483_12750)	truD	2763474..2764517 (-)	1044	WP_154205036.1	tRNA pseudouridine(13) synthase TruD	-
RO483_RS12755 (RO483_12755)	ispF	2764563..2765039 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RO483_RS12760 (RO483_12760)	ispD	2765054..2765761 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
RO483_RS12765 (RO483_12765)	ftsB	2765763..2766044 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=887930 RO483_RS12730 WP_005380887.1 2760068..2761054(-) (rpoS) [Vibrio alginolyticus strain S10]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=887930 RO483_RS12730 WP_005380887.1 2760068..2761054(-) (rpoS) [Vibrio alginolyticus strain S10]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTTGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAGGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854