Detailed information NTG0887917

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: RO483_RS06245
• Genome accession: NZ_CP135968
• Coordinates: 1349101..1350522 (-)
• Length: 473 a.a.
• NCBI ID: WP_104975258.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain S10
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1344101..1355522

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RO483_RS06225 (RO483_06225)	-	1345428..1346632 (+)	1205	WP_182016900.1	IS3 family transposase	-
RO483_RS06230 (RO483_06230)	cdd	1346673..1347560 (-)	888	WP_005377892.1	cytidine deaminase	-
RO483_RS06235 (RO483_06235)	-	1347992..1348669 (-)	678	WP_005377888.1	LrgB family protein	-
RO483_RS06240 (RO483_06240)	-	1348671..1349045 (-)	375	WP_005397786.1	CidA/LrgA family protein	-
RO483_RS06245 (RO483_06245)	sbcB	1349101..1350522 (-)	1422	WP_104975258.1	exodeoxyribonuclease I	Machinery gene
RO483_RS06250 (RO483_06250)	-	1350680..1352053 (-)	1374	WP_193837428.1	L-cystine transporter	-
RO483_RS06255 (RO483_06255)	-	1352254..1352943 (-)	690	WP_005377884.1	NAD(P)H-binding protein	-
RO483_RS06260 (RO483_06260)	cobT	1353192..1354235 (+)	1044	WP_005377883.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
RO483_RS06265 (RO483_06265)	-	1354235..1355041 (+)	807	WP_053303161.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54543.74 Da
• Isoelectric Point: 4.8239

>NTDB_id=887917 RO483_RS06245 WP_104975258.1 1349101..1350522(-) (sbcB) [Vibrio alginolyticus strain S10]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIEPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLAILRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=887917 RO483_RS06245 WP_104975258.1 1349101..1350522(-) (sbcB) [Vibrio alginolyticus strain S10]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGAACCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCTGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCAATACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGAGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.858	100	0.789