Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   RO483_RS01130 Genome accession   NZ_CP135968
Coordinates   242184..243191 (-) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain S10     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 237184..248191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO483_RS01110 (RO483_01110) - 237512..238429 (-) 918 WP_005383178.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  RO483_RS01115 (RO483_01115) hslU 239389..240720 (-) 1332 WP_053303349.1 HslU--HslV peptidase ATPase subunit -
  RO483_RS01120 (RO483_01120) hslV 240744..241295 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  RO483_RS01125 (RO483_01125) ftsN 241411..241959 (-) 549 WP_172563399.1 cell division protein FtsN -
  RO483_RS01130 (RO483_01130) cytR 242184..243191 (-) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  RO483_RS01135 (RO483_01135) priA 243516..245720 (-) 2205 WP_203345707.1 primosomal protein N' -
  RO483_RS01140 (RO483_01140) rpmE 246016..246237 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  RO483_RS01145 (RO483_01145) rpsJ 246693..247004 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  RO483_RS01150 (RO483_01150) rplC 247019..247648 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=887907 RO483_RS01130 WP_005379543.1 242184..243191(-) (cytR) [Vibrio alginolyticus strain S10]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=887907 RO483_RS01130 WP_005379543.1 242184..243191(-) (cytR) [Vibrio alginolyticus strain S10]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTAAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTCCCGACAGTACATATTGATAAC
CTGACCTCTGCATTTGAAGCAGTGAATTACCTGACTCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAATTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCGCAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893