Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RUL31_RS14450 Genome accession   NZ_CP135964
Coordinates   2938432..2939178 (-) Length   248 a.a.
NCBI ID   WP_315915535.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2933432..2944178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS14425 (RUL31_14425) mreC 2933828..2934700 (-) 873 WP_010789375.1 rod shape-determining protein MreC -
  RUL31_RS14430 (RUL31_14430) mreB 2934731..2935744 (-) 1014 WP_003325239.1 cell shape-determining protein MreB -
  RUL31_RS14435 (RUL31_14435) radC 2935836..2936531 (-) 696 WP_003325238.1 DNA repair protein RadC -
  RUL31_RS14440 (RUL31_14440) - 2936566..2937135 (-) 570 WP_061669850.1 nucleoside triphosphate pyrophosphatase -
  RUL31_RS14445 (RUL31_14445) - 2937282..2938298 (-) 1017 WP_315915534.1 SPOR domain-containing protein -
  RUL31_RS14450 (RUL31_14450) comC 2938432..2939178 (-) 747 WP_315915535.1 prepilin peptidase Machinery gene
  RUL31_RS14455 (RUL31_14455) - 2939332..2940627 (-) 1296 WP_315915537.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  RUL31_RS14460 (RUL31_14460) valS 2940685..2943327 (-) 2643 WP_315915539.1 valine--tRNA ligase -
  RUL31_RS14465 (RUL31_14465) - 2943774..2943965 (+) 192 WP_010789382.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26807.55 Da        Isoelectric Point: 8.9511

>NTDB_id=887840 RUL31_RS14450 WP_315915535.1 2938432..2939178(-) (comC) [Bacillus atrophaeus strain CD303]
MVFVMFILGLIFGSFFYAAGCRIPLQISIIKPRSSCSFCRHPLSYAELIPVFSFFLQKGRCKSCAQKLSLMYPAAELWTA
CLFTAAYLRFGLSGELFVALLLISLLSIIVASDIHYMLIPDSVLMFFLPFLIAGRMIAPLPAWYDSLSGAAAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGIALGVKMLIAAFVLAVFIGMLYGACGTLSGKLDRKQPIPFAPAIAAGSLVSYLYGEEILA
LYVKIAMY

Nucleotide


Download         Length: 747 bp        

>NTDB_id=887840 RUL31_RS14450 WP_315915535.1 2938432..2939178(-) (comC) [Bacillus atrophaeus strain CD303]
ATGGTTTTTGTCATGTTTATCCTCGGTCTCATCTTCGGGTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCCATTATAAAACCGCGCTCATCCTGTTCATTCTGCCGCCATCCGTTGTCTTATGCTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCAGATGTAAAAGCTGTGCACAAAAACTGTCGCTGATGTATCCGGCCGCAGAGCTTTGGACAGCA
TGTTTGTTTACGGCAGCTTATCTGCGTTTCGGTTTATCTGGGGAACTTTTTGTCGCGCTGCTGCTCATATCATTGCTGAG
CATTATCGTGGCATCAGATATTCACTATATGCTGATCCCTGACAGCGTGCTGATGTTTTTTCTCCCTTTTTTGATAGCAG
GAAGAATGATTGCACCGCTTCCTGCTTGGTATGATAGTTTATCAGGAGCCGCAGCCGGTTTTTTCATGCTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGAATCGGGGGCGGCGATATTAAGCTATTTGCCGTTTTGGGTATCGCGCTTGGTGTTAAAAT
GCTGATCGCAGCCTTTGTCCTTGCTGTCTTTATAGGTATGCTGTACGGCGCATGCGGCACGCTGTCAGGAAAGCTCGATC
GAAAACAGCCGATCCCCTTCGCCCCTGCGATAGCTGCCGGAAGCTTGGTAAGTTATTTGTACGGTGAAGAAATATTAGCA
CTCTATGTCAAAATCGCCATGTACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

62.348

99.597

0.621