Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RUL31_RS08085 Genome accession   NZ_CP135964
Coordinates   1605773..1606051 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1600773..1611051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS08065 (RUL31_08065) - 1601969..1602883 (+) 915 WP_315916852.1 ketopantoate reductase family protein -
  RUL31_RS08070 (RUL31_08070) - 1602914..1604146 (-) 1233 WP_199680336.1 aminopeptidase -
  RUL31_RS08075 (RUL31_08075) - 1604248..1604382 (-) 135 WP_010788482.1 protein YkpC -
  RUL31_RS08080 (RUL31_08080) mreBH 1604483..1605490 (-) 1008 WP_035175453.1 cell shape-determining protein MreBH -
  RUL31_RS08085 (RUL31_08085) abrB 1605773..1606051 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  RUL31_RS08090 (RUL31_08090) - 1606264..1607550 (+) 1287 WP_003329145.1 ATP-binding protein -
  RUL31_RS08095 (RUL31_08095) - 1607563..1608402 (+) 840 WP_088117093.1 gamma-glutamylcyclotransferase -
  RUL31_RS08100 (RUL31_08100) ktrC 1608452..1609117 (+) 666 WP_061571456.1 Ktr system potassium transporter KtrC -
  RUL31_RS08105 (RUL31_08105) ade 1609287..1611014 (+) 1728 WP_315916853.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=887815 RUL31_RS08085 WP_003329146.1 1605773..1606051(+) (abrB) [Bacillus atrophaeus strain CD303]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=887815 RUL31_RS08085 WP_003329146.1 1605773..1606051(+) (abrB) [Bacillus atrophaeus strain CD303]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAAATCGTCTTGAAAAAATATAAGCCGCACGGCGTGT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATACGGCAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAG
CAGCTGCTTGACGAAATTCAGGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576