Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   RUL31_RS07965 Genome accession   NZ_CP135964
Coordinates   1581403..1581978 (+) Length   191 a.a.
NCBI ID   WP_003327252.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576403..1586978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS07935 (RUL31_07935) dapD 1576533..1577243 (+) 711 WP_003327258.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  RUL31_RS07940 (RUL31_07940) - 1577316..1578440 (+) 1125 WP_061670698.1 N-acetyldiaminopimelate deacetylase -
  RUL31_RS07945 (RUL31_07945) - 1578501..1578746 (+) 246 WP_003327256.1 YkuS family protein -
  RUL31_RS07950 (RUL31_07950) - 1578785..1579588 (-) 804 WP_315916846.1 mechanosensitive ion channel family protein -
  RUL31_RS07955 (RUL31_07955) ahpA 1579838..1580380 (+) 543 WP_003327254.1 biofilm-specific peroxidase AhpA -
  RUL31_RS07960 (RUL31_07960) - 1580465..1580923 (+) 459 WP_003327253.1 TlpA disulfide reductase family protein -
  RUL31_RS07965 (RUL31_07965) rok 1581403..1581978 (+) 576 WP_003327252.1 transcriptional regulator Rok Regulator
  RUL31_RS07970 (RUL31_07970) - 1582024..1582983 (-) 960 WP_061571435.1 hypothetical protein -
  RUL31_RS07975 (RUL31_07975) - 1583127..1583711 (+) 585 WP_010788467.1 molybdenum cofactor guanylyltransferase -
  RUL31_RS07980 (RUL31_07980) - 1583783..1584802 (+) 1020 WP_088117081.1 MoeB/ThiF family adenylyltransferase -
  RUL31_RS07985 (RUL31_07985) glp 1584821..1586113 (+) 1293 WP_315916847.1 gephyrin-like molybdotransferase Glp -
  RUL31_RS07990 (RUL31_07990) mobB 1586074..1586598 (+) 525 WP_315916848.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21713.65 Da        Isoelectric Point: 9.8783

>NTDB_id=887814 RUL31_RS07965 WP_003327252.1 1581403..1581978(+) (rok) [Bacillus atrophaeus strain CD303]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSSAAETKKDFRPERKSESLPVLAELAAQEIRSYQPQ
QASQPQPQSISSIPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQSL
IKMYPEVKKPYRGQYILEGEIASDSAENVTE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=887814 RUL31_RS07965 WP_003327252.1 1581403..1581978(+) (rok) [Bacillus atrophaeus strain CD303]
ATGTTTAATGAGAGGGAAGCTTTACGCTTGCGTTTGGAACAGTTAAATGAGGCTGAGGTTAAAGTCATCCGTGAATATCA
AATAGAGCGTGACAAAATATATGCAAAACTAAGAGAGCTTGACCGTAATGGAAGCTCAGCAGCGGAAACAAAAAAAGATT
TTCGCCCGGAAAGAAAAAGTGAGTCTCTTCCTGTGCTAGCCGAGCTTGCAGCACAAGAGATCAGAAGCTATCAGCCGCAG
CAGGCATCACAGCCGCAGCCGCAATCCATCTCTTCTATTCCGGCGGGTATTCCGGACGGAACGACAAGAAGAAGAAGAGG
AACGGCAAGACCGGGTTCAAAGGCAGCAAAGCTTCGTGAAGCGGCAATCAAAACATTAAAACGCCATAACGCAGCGATCA
AAAGCTCTGAACTTCAAAAGGAAATTGAGAAGGAAAGCGGGCTTGAAATCCCTAATATGACAACGTTTATGCAAAGTTTA
ATTAAAATGTATCCGGAAGTGAAAAAGCCATATCGCGGCCAGTACATTTTAGAAGGCGAAATCGCTTCAGACTCTGCTGA
AAATGTGACTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.598

100

0.88