Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   RUL31_RS06355 Genome accession   NZ_CP135964
Coordinates   1302870..1304033 (+) Length   387 a.a.
NCBI ID   WP_315916728.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1297870..1309033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS06325 (RUL31_06325) - 1298287..1298460 (+) 174 WP_315916727.1 hypothetical protein -
  RUL31_RS06330 (RUL31_06330) - 1298592..1299773 (+) 1182 WP_034718362.1 putative glycoside hydrolase -
  RUL31_RS06335 (RUL31_06335) - 1299922..1300500 (+) 579 WP_003327580.1 GNAT family N-acetyltransferase -
  RUL31_RS06340 (RUL31_06340) spx 1300681..1301076 (+) 396 WP_003327578.1 transcriptional regulator Spx -
  RUL31_RS06345 (RUL31_06345) - 1301112..1301774 (-) 663 WP_003327577.1 TerC family protein -
  RUL31_RS06350 (RUL31_06350) mecA 1302054..1302710 (+) 657 WP_061571227.1 adaptor protein MecA Regulator
  RUL31_RS06355 (RUL31_06355) coiA 1302870..1304033 (+) 1164 WP_315916728.1 competence protein CoiA family protein Machinery gene
  RUL31_RS06360 (RUL31_06360) pepF 1304262..1306091 (+) 1830 WP_167375115.1 oligoendopeptidase F -
  RUL31_RS06365 (RUL31_06365) - 1306127..1306294 (-) 168 WP_003327573.1 hypothetical protein -
  RUL31_RS06370 (RUL31_06370) spxH 1306609..1307511 (-) 903 WP_003327572.1 protease adaptor protein SpxH -
  RUL31_RS06375 (RUL31_06375) - 1307508..1307906 (-) 399 WP_010788246.1 hemoglobin-like protein HbO -
  RUL31_RS21310 - 1308183..1308530 (-) 348 Protein_1208 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 387 a.a.        Molecular weight: 45299.75 Da        Isoelectric Point: 9.5090

>NTDB_id=887808 RUL31_RS06355 WP_315916728.1 1302870..1304033(+) (coiA) [Bacillus atrophaeus strain CD303]
MFSAVTSEGKTVYLMKERYAATEASELRKTKFFCPVCREQLDVKLGSLKAPHFAHKQNKACTIEFEPESAYHLEGKKQLY
SWLKEKGCSPVLEPYVKSIQQRPDIMANVQGDMLAFEFQCANLAPDLLYKRTQGLKQAGAEPLWIIGGNRLKRTSRHFFQ
LSAFHWQFMKENPRQFLLFYCPEARSFYKLHHITPFYANYACASLEAIPLTKANVKDMWFSASAPSFQPAAWQNAITRFR
HKPPRFLSKEANHLRLLFYEKRQTPLPFLPPEVFAPIPLGAVFLSPVFIWQGHLYLYMTDLAEKRMSIRFSAVFRFCKMQ
IQKKRIHLRYEYSEQLLREALKQYINFLCGKEFLMEGEKEVYMVKNPVHDCRTLEGVMERDQTCFGE

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=887808 RUL31_RS06355 WP_315916728.1 1302870..1304033(+) (coiA) [Bacillus atrophaeus strain CD303]
TTGTTTAGTGCTGTGACATCAGAAGGTAAGACTGTTTACCTGATGAAAGAAAGATATGCTGCAACAGAAGCGTCGGAATT
GAGAAAAACGAAATTCTTTTGTCCGGTTTGCAGAGAACAGCTCGATGTCAAGCTCGGCTCTTTAAAAGCCCCGCATTTTG
CCCATAAGCAGAATAAAGCTTGCACCATAGAGTTTGAACCGGAGAGCGCCTACCATTTAGAAGGGAAAAAGCAGCTTTAT
TCTTGGCTGAAAGAGAAAGGATGCTCACCTGTTCTGGAGCCATATGTAAAAAGCATACAGCAAAGGCCTGACATTATGGC
AAATGTACAAGGAGACATGCTGGCTTTTGAATTTCAATGCGCGAACCTCGCTCCAGACCTCTTATATAAACGCACGCAAG
GCTTAAAGCAAGCAGGGGCTGAACCGCTCTGGATCATCGGCGGAAACCGTTTAAAACGCACGTCAAGGCACTTTTTCCAG
CTATCTGCTTTTCATTGGCAATTCATGAAGGAGAATCCACGGCAGTTCCTGTTGTTTTACTGTCCGGAAGCACGCTCCTT
CTATAAGCTCCATCATATTACCCCGTTCTATGCGAATTATGCCTGCGCCTCACTCGAAGCAATCCCGCTCACAAAAGCAA
ATGTGAAGGATATGTGGTTCTCAGCATCCGCACCTTCCTTTCAGCCTGCTGCCTGGCAAAACGCCATTACCCGTTTTCGG
CATAAACCTCCTCGTTTTTTATCCAAAGAAGCGAATCATCTTCGGCTCCTTTTTTATGAAAAACGCCAGACGCCGCTCCC
ATTTTTACCGCCTGAAGTATTTGCCCCCATTCCTCTTGGAGCCGTTTTTTTAAGTCCTGTTTTCATATGGCAGGGCCATC
TTTATCTGTATATGACCGACCTCGCAGAAAAGCGTATGTCCATCAGGTTTTCTGCTGTTTTTCGATTTTGTAAAATGCAG
ATTCAAAAAAAACGGATTCATTTAAGGTACGAATATAGTGAACAGCTTTTACGTGAGGCATTGAAACAGTACATCAATTT
TCTGTGCGGGAAGGAATTTTTAATGGAGGGTGAGAAAGAAGTATATATGGTGAAAAATCCAGTTCATGACTGCCGCACGC
TTGAGGGTGTTATGGAGCGCGACCAAACCTGTTTTGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

57.337

95.09

0.545