Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RUL31_RS00245 Genome accession   NZ_CP135964
Coordinates   44601..44891 (-) Length   96 a.a.
NCBI ID   WP_088116342.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39601..49891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS00205 (RUL31_00205) darA 39619..39948 (+) 330 WP_003328606.1 cyclic di-AMP receptor DarA -
  RUL31_RS00210 (RUL31_00210) - 39961..40401 (+) 441 WP_315916268.1 YaaR family protein -
  RUL31_RS00215 (RUL31_00215) holB 40413..41402 (+) 990 WP_315916269.1 DNA polymerase III subunit delta' -
  RUL31_RS00220 (RUL31_00220) ricT 41405..42232 (+) 828 WP_061571110.1 competence/sporulation regulator complex protein RicT -
  RUL31_RS00225 (RUL31_00225) yabA 42247..42606 (+) 360 WP_003328601.1 replication initiation-control protein YabA -
  RUL31_RS00230 (RUL31_00230) - 42667..43410 (+) 744 WP_106273530.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RUL31_RS00235 (RUL31_00235) - 43397..43696 (+) 300 WP_315916270.1 GIY-YIG nuclease family protein -
  RUL31_RS00240 (RUL31_00240) rsmI 43671..44549 (+) 879 WP_010787389.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RUL31_RS00245 (RUL31_00245) abrB 44601..44891 (-) 291 WP_088116342.1 transition state genes transcriptional regulator AbrB Regulator
  RUL31_RS00250 (RUL31_00250) metG 45378..47372 (+) 1995 WP_315916271.1 methionine--tRNA ligase -
  RUL31_RS00255 (RUL31_00255) - 47451..48218 (+) 768 WP_010787391.1 TatD family hydrolase -
  RUL31_RS00260 (RUL31_00260) - 48376..49701 (+) 1326 WP_315916272.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10858.67 Da        Isoelectric Point: 6.3482

>NTDB_id=887784 RUL31_RS00245 WP_088116342.1 44601..44891(-) (abrB) [Bacillus atrophaeus strain CD303]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSQEG
AEQIIKEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=887784 RUL31_RS00245 WP_088116342.1 44601..44891(-) (abrB) [Bacillus atrophaeus strain CD303]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAAACGGTAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

94.792

100

0.948