Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RS891_RS28200 Genome accession   NZ_CP135922
Coordinates   6248540..6249907 (-) Length   455 a.a.
NCBI ID   WP_063567409.1    Uniprot ID   A0A1H4I2R2
Organism   Paenibacillus sp. BIC5C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6243540..6254907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS891_RS28170 ispF 6243637..6244113 (-) 477 WP_053779226.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RS891_RS28175 ispD 6244110..6244802 (-) 693 WP_315793741.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RS891_RS28180 - 6244896..6245981 (-) 1086 WP_113055851.1 PIN/TRAM domain-containing protein -
  RS891_RS28185 - 6246157..6246552 (+) 396 WP_024633611.1 hypothetical protein -
  RS891_RS28190 pssA 6246675..6247406 (-) 732 WP_113055852.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  RS891_RS28195 disA 6247450..6248526 (-) 1077 WP_315793742.1 DNA integrity scanning diadenylate cyclase DisA -
  RS891_RS28200 radA 6248540..6249907 (-) 1368 WP_063567409.1 DNA repair protein RadA Machinery gene
  RS891_RS28205 - 6250201..6252663 (-) 2463 WP_076292149.1 ATP-dependent Clp protease ATP-binding subunit -
  RS891_RS28210 - 6252855..6253925 (-) 1071 WP_053779232.1 protein arginine kinase -
  RS891_RS28215 - 6253954..6254478 (-) 525 WP_113055854.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49642.26 Da        Isoelectric Point: 6.8212

>NTDB_id=887725 RS891_RS28200 WP_063567409.1 6248540..6249907(-) (radA) [Paenibacillus sp. BIC5C1]
MAKVKTKFQCTECGYEAPKWYGKCPGCQSWNSMVEETETVVKTQGRNSPLFESKDKPLPIIDIDSGQEPRVQTGIEELNR
VLGGGIVPGSLVLVGGDPGIGKSTLMLQTSHALTHSGLRVLYVSGEESVKQTKLRADRLGALSPELYVLCETNMERVEEA
VEQIQPHFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPLLVELQALISTTHFPS
PRRMATGVDLHRLNLIIAVLEKRMGMFLQTQDAYLNVAGGVRLDEPAVDLAVAVSIASSLRDVPTKPDDVIFGEIGLTGE
VRAVSRAEQRVKEAQKLGFKRVILPEKSLKGWKHPRGIQLIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=887725 RS891_RS28200 WP_063567409.1 6248540..6249907(-) (radA) [Paenibacillus sp. BIC5C1]
GTGGCCAAAGTTAAAACCAAGTTTCAGTGTACGGAATGCGGCTATGAAGCCCCCAAATGGTACGGCAAATGTCCGGGTTG
TCAGTCTTGGAATTCAATGGTGGAAGAAACCGAAACGGTGGTCAAAACACAAGGGAGAAATTCCCCTCTTTTTGAGAGTA
AAGATAAGCCACTTCCCATCATAGATATAGATAGCGGTCAGGAACCGCGTGTACAGACTGGAATTGAAGAGCTGAACCGG
GTTTTGGGCGGCGGAATTGTTCCAGGATCTCTCGTTCTGGTGGGTGGAGACCCCGGAATCGGAAAATCAACGTTGATGTT
GCAAACATCTCATGCATTGACTCATTCAGGTTTGCGCGTGTTATATGTCTCAGGCGAGGAATCAGTTAAGCAAACGAAAT
TGCGAGCTGACCGTCTGGGTGCGCTGTCTCCTGAGTTATATGTACTATGTGAGACCAATATGGAGCGGGTTGAGGAAGCG
GTGGAGCAGATCCAGCCGCATTTTCTAGTCATCGACTCCATTCAGACCGTATATCTGCCAGAAGTCACCAGTGCTCCCGG
CAGTGTTGCTCAGGTAAGGGAATGTACATCACGGTTCATGCGGATCGCCAAAGGGCGAGGCATTGCAACCGTACTTGTGG
GGCATGTTACGAAAGAAGGTGCTATTGCCGGTCCACGTATGTTGGAGCATATGGTGGACTGTGTTCTTTATTTTGAAGGA
GAGCGGCATCATACGTATCGCCTTCTACGTGCGGTCAAGAACCGTTTTGGTTCGACCAATGAGATCGGCATTTTTGAAAT
GGGCGAAGATGGACTTCGTGAAGTAGGCAACCCTTCTGAGCTCTTCCTGTCAGAACGTCCACTCGGTGTGGCTGGTTCTA
CCGTAGTTGCCAGCATGGAGGGCACACGTCCTCTGCTTGTGGAATTGCAGGCATTGATTTCGACCACACATTTCCCTTCC
CCCCGACGTATGGCGACAGGGGTAGATCTCCATCGATTAAATTTGATTATTGCGGTACTGGAGAAACGGATGGGCATGTT
CTTGCAAACACAGGATGCTTATTTGAACGTAGCTGGTGGCGTGAGATTAGATGAGCCGGCAGTGGATTTGGCGGTTGCTG
TAAGTATCGCATCCAGCTTGAGAGATGTGCCGACCAAGCCAGATGACGTCATTTTTGGGGAAATCGGTTTGACGGGTGAA
GTTCGGGCCGTTTCACGGGCTGAACAACGTGTGAAAGAAGCTCAAAAATTGGGCTTCAAGCGTGTCATTTTACCAGAAAA
AAGCTTAAAGGGCTGGAAACATCCTCGCGGGATACAACTGATCGGTGTGAATACCGTGGCAGATGCACTAGCGGTTGCTT
TAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

AAA domain (AAA_25)

(71-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H4I2R2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

100

0.655
  radA Streptococcus pneumoniae Rx1

59.556

98.901

0.589
  radA Streptococcus pneumoniae D39

59.556

98.901

0.589
  radA Streptococcus pneumoniae R6

59.556

98.901

0.589
  radA Streptococcus pneumoniae TIGR4

59.556

98.901

0.589
  radA Streptococcus mitis NCTC 12261

59.556

98.901

0.589
  radA Streptococcus mitis SK321

59.556

98.901

0.589