Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RS891_RS06735 Genome accession   NZ_CP135922
Coordinates   1502602..1503021 (+) Length   139 a.a.
NCBI ID   WP_397386902.1    Uniprot ID   -
Organism   Paenibacillus sp. BIC5C1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1497602..1508021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS891_RS06710 groL 1497855..1499486 (+) 1632 WP_113051828.1 chaperonin GroEL -
  RS891_RS06715 - 1499603..1499839 (+) 237 WP_315794850.1 hypothetical protein -
  RS891_RS06720 - 1500061..1501104 (+) 1044 WP_315794851.1 NAD(P)/FAD-dependent oxidoreductase -
  RS891_RS06725 - 1501225..1501824 (-) 600 WP_315794852.1 hypothetical protein -
  RS891_RS06730 - 1502110..1502373 (-) 264 WP_397333620.1 DUF2642 domain-containing protein -
  RS891_RS06735 nucA/comI 1502602..1503021 (+) 420 WP_397386902.1 sporulation protein Machinery gene
  RS891_RS06740 - 1503079..1503663 (-) 585 WP_315794853.1 helix-turn-helix domain-containing protein -
  RS891_RS06745 - 1503967..1505031 (+) 1065 WP_113051834.1 LLM class flavin-dependent oxidoreductase -
  RS891_RS06750 - 1505060..1506028 (+) 969 WP_315794854.1 alpha/beta hydrolase -
  RS891_RS06755 - 1506250..1507161 (+) 912 WP_315794855.1 helix-turn-helix domain-containing protein -
  RS891_RS06760 - 1507188..1507676 (+) 489 WP_113051837.1 DinB family protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15047.06 Da        Isoelectric Point: 7.6631

>NTDB_id=887712 RS891_RS06735 WP_397386902.1 1502602..1503021(+) (nucA/comI) [Paenibacillus sp. BIC5C1]
MVKKCCMLVLILVMALSGSVYVQPSSTVQGAATTYTLTFPMDRYPETGAHIRDAIAAGHSAVCTIDRDGADANRRESLKG
YPTKAGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEKYSNGTRVKFTVK

Nucleotide


Download         Length: 420 bp        

>NTDB_id=887712 RS891_RS06735 WP_397386902.1 1502602..1503021(+) (nucA/comI) [Paenibacillus sp. BIC5C1]
ATGGTTAAGAAGTGTTGTATGCTTGTCCTTATTCTTGTTATGGCTTTATCTGGGAGTGTATATGTGCAGCCCTCTTCGAC
AGTCCAAGGTGCTGCGACCACGTATACGTTGACCTTCCCGATGGATCGTTACCCGGAAACAGGAGCGCATATCCGTGACG
CCATTGCAGCAGGGCATTCGGCAGTGTGTACCATTGACCGGGATGGGGCGGATGCCAATCGCAGGGAGTCGCTGAAAGGC
TATCCGACCAAAGCGGGTTATGATCGGGATGAATGGCCGATGGCGATGTGTGAAGAAGGTGGCGCCGGCGCGGATATTAG
ATACATAAGTCCAAGTGATAACAGGGGGGCTGGATCTTGGGTGGGAAATCAGTTGGAAAAATATTCAAATGGGACAAGGG
TCAAGTTTACAGTGAAATGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.871

89.209

0.525