Detailed information NTG0088736

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABK18_RS16825
• Genome accession: NZ_AP027652
• Coordinates: 3473246..3474271 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain PSJ-42
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3468246..3479271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABK18_RS16795 (VEE39_32140)	zapB	3468330..3468575 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
AABK18_RS16800 (VEE39_32150)	rraA	3468660..3469145 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABK18_RS16805 (VEE39_32160)	menA	3469238..3470164 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABK18_RS16810 (VEE39_32170)	hslU	3470231..3471562 (-)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
AABK18_RS16815 (VEE39_32180)	hslV	3471572..3472102 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABK18_RS16820 (VEE39_32190)	ftsN	3472195..3473154 (-)	960	WP_000068834.1	cell division protein FtsN	-
AABK18_RS16825 (VEE39_32200)	cytR	3473246..3474271 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABK18_RS16830 (VEE39_32210)	priA	3474427..3476625 (-)	2199	WP_001395720.1	primosomal protein N'	Machinery gene
AABK18_RS16835 (VEE39_32220)	rpmE	3476828..3477040 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
AABK18_RS16840 (VEE39_32230)	-	3477095..3477718 (-)	624	WP_001402674.1	TIGR02117 family protein	-
AABK18_RS16845 (VEE39_32240)	yiiX	3477725..3478333 (-)	609	WP_001402675.1	YiiX family permuted papain-like enzyme	-
AABK18_RS16850 (VEE39_32250)	metJ	3478393..3478710 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=88736 AABK18_RS16825 WP_000644904.1 3473246..3474271(-) (cytR) [Escherichia coli strain PSJ-42]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=88736 AABK18_RS16825 WP_000644904.1 3473246..3474271(-) (cytR) [Escherichia coli strain PSJ-42]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTATCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628