Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RS167_RS08740 Genome accession   NZ_CP135664
Coordinates   1795249..1795878 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain TUM9975     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1790249..1800878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS167_RS08720 (RS167_08720) ycbZ 1790639..1792399 (-) 1761 WP_000156502.1 Lon protease family protein -
  RS167_RS08725 (RS167_08725) matP 1792585..1793037 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  RS167_RS08730 (RS167_08730) ompA 1793113..1794165 (-) 1053 WP_001346420.1 porin OmpA -
  RS167_RS08735 (RS167_08735) sulA 1794521..1795030 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  RS167_RS08740 (RS167_08740) sxy/tfoX 1795249..1795878 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RS167_RS08745 (RS167_08745) yccS 1795841..1798003 (-) 2163 WP_000875041.1 YccS family putative transporter -
  RS167_RS08750 (RS167_08750) yccF 1798013..1798459 (-) 447 WP_001261235.1 YccF domain-containing protein -
  RS167_RS08755 (RS167_08755) helD 1798582..1800636 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=887323 RS167_RS08740 WP_000839151.1 1795249..1795878(+) (sxy/tfoX) [Escherichia coli strain TUM9975]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=887323 RS167_RS08740 WP_000839151.1 1795249..1795878(+) (sxy/tfoX) [Escherichia coli strain TUM9975]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995