Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AABK18_RS15905 Genome accession   NZ_AP027652
Coordinates   3286684..3287676 (+) Length   330 a.a.
NCBI ID   WP_073520201.1    Uniprot ID   -
Organism   Escherichia coli strain PSJ-42     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3281684..3292676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK18_RS15880 (VEE39_30520) rbsD 3281808..3282227 (+) 420 WP_001364631.1 D-ribose pyranase -
  AABK18_RS15885 (VEE39_30530) rbsA 3282235..3283740 (+) 1506 WP_000387756.1 ribose ABC transporter ATP-binding protein RbsA -
  AABK18_RS15890 (VEE39_30540) rbsC 3283745..3284710 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  AABK18_RS15895 (VEE39_30550) rbsB 3284735..3285625 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  AABK18_RS15900 (VEE39_30560) rbsK 3285751..3286680 (+) 930 WP_001300603.1 ribokinase -
  AABK18_RS15905 (VEE39_30570) cytR 3286684..3287676 (+) 993 WP_073520201.1 ribose operon transcriptional repressor RbsR Regulator
  AABK18_RS15910 (VEE39_30580) mdtD 3287642..3289069 (-) 1428 WP_001280838.1 multidrug transporter subunit MdtD -
  AABK18_RS15915 (VEE39_30590) yieP 3289092..3289784 (-) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36596.93 Da        Isoelectric Point: 5.2141

>NTDB_id=88728 AABK18_RS15905 WP_073520201.1 3286684..3287676(+) (cytR) [Escherichia coli strain PSJ-42]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYLAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=88728 AABK18_RS15905 WP_073520201.1 3286684..3287676(+) (cytR) [Escherichia coli strain PSJ-42]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCTGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment