Detailed information NTG0887132

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: RS401_RS26080
• Genome accession: NZ_CP135601
• Coordinates: 4988615..4989964 (-)
• Length: 449 a.a.
• NCBI ID: WP_315839150.1
• Uniprot ID: -
• Organism: Bacillus sp. SI2
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4983615..4994964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RS401_RS26060 (RS401_26060)	secA	4983937..4986444 (-)	2508	WP_000579368.1	preprotein translocase subunit SecA	-
RS401_RS26065 (RS401_26065)	hpf	4986721..4987263 (-)	543	WP_000671189.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
RS401_RS26070 (RS401_26070)	cspC	4987587..4987784 (-)	198	WP_001990088.1	cold shock protein CspC	-
RS401_RS26075 (RS401_26075)	comFC	4987911..4988615 (-)	705	WP_315839149.1	comF operon protein ComFC	-
RS401_RS26080 (RS401_26080)	comFA	4988615..4989964 (-)	1350	WP_315839150.1	ATP-dependent helicase ComFA	Machinery gene
RS401_RS26085 (RS401_26085)	-	4990092..4991405 (-)	1314	WP_315839151.1	NlpC/P60 family protein	-
RS401_RS26090 (RS401_26090)	-	4991660..4991974 (-)	315	WP_000400857.1	helix-turn-helix domain-containing protein	-
RS401_RS26095 (RS401_26095)	-	4992148..4992990 (-)	843	WP_000844766.1	DegV family protein	-
RS401_RS26100 (RS401_26100)	-	4993230..4993865 (+)	636	WP_000926682.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51265.97 Da
• Isoelectric Point: 9.7163

>NTDB_id=887132 RS401_RS26080 WP_315839150.1 4988615..4989964(-) (comFA) [Bacillus sp. SI2]
MLAGKQLLLEELSSDLRRELSDLKKKGEVICVQGVIKKVSKYICQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECTVLVRGIHERKGERELHSLQWKGALTTGQELAAQGVIKAIQQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELVPRLQEVFPSINVAALYGGSVDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRTGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFL
FVPHVRYIEEIGLLLKGLDHRIDGVHAEDPMRKEKVEAFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHYGKTESMVRAKRHIQSMNKSAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=887132 RS401_RS26080 WP_315839150.1 4988615..4989964(-) (comFA) [Bacillus sp. SI2]
ATGCTTGCTGGGAAACAGTTACTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTAAAAAAGAAGGG
AGAGGTTATATGTGTACAAGGTGTAATAAAGAAGGTTTCTAAATATATATGTCAGCGTTGTGGAAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCAGTAAAGTATGTACGTATTGCCGGAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTACTGTACTTGTTCGCGGGATTCATGAAAGAAAAGGGGAAAGGGAATTACATTCGTTACAGTGGAAAGGTGCATT
GACTACTGGTCAGGAGTTGGCGGCGCAAGGCGTCATAAAAGCGATTCAGCAAAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGAGCTGGAAAAACAGAGATGTTATTTTACGGTATAGAAGAGGCACTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGTACCGAGATTACAAGAAGTGTTTCCAAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCGTGAAAAAGATGCAGCGTTAGTCGTTGCAACGACGCATCAATTGTTACGTTATTATAGAGCGTTTC
ATGTAATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAGCAAGCGATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGCAATTTCAGAACGGGGAAACAAAA
AGGTATCATTGTTTCGGGACGATACCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGTGTGTTACTACAATGGTTAAAAATGTACGTAAACAAAAAATACCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAGGCCTGTTATTGAAAGGGTTGGATCATAGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTGGAAGCGTTTCGAAAGGGGGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGGGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGGGCTGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCGTATGGTGAGGTTGTTTATTTTCATTACGGCAAGACAGAGTC
GATGGTACGTGCGAAAAGACATATTCAAAGTATGAACAAAAGTGCGAAAGAACAAGGATTAATTGATTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (107-254)

• Helicase conserved C-terminal domain (Helicase_C) (312-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.452	98.441	0.497
comFA	Latilactobacillus sakei subsp. sakei 23K	40.955	88.641	0.363