Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RS401_RS09795 Genome accession   NZ_CP135601
Coordinates   1908484..1908771 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus sp. SI2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1903484..1913771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS401_RS09775 (RS401_09775) - 1904660..1904857 (+) 198 WP_001048092.1 DUF4083 domain-containing protein -
  RS401_RS09780 (RS401_09780) - 1904889..1905350 (+) 462 WP_000024996.1 NUDIX hydrolase -
  RS401_RS09785 (RS401_09785) nadE 1905397..1906215 (-) 819 WP_001990339.1 ammonia-dependent NAD(+) synthetase -
  RS401_RS09790 (RS401_09790) - 1906487..1908367 (+) 1881 WP_315839336.1 ABC transporter permease -
  RS401_RS09795 (RS401_09795) abrB 1908484..1908771 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RS401_RS09800 (RS401_09800) - 1909046..1909996 (+) 951 WP_001089035.1 serine protease -
  RS401_RS09805 (RS401_09805) - 1910037..1910345 (-) 309 WP_001259897.1 helix-turn-helix transcriptional regulator -
  RS401_RS09810 (RS401_09810) - 1910453..1911388 (+) 936 WP_001990337.1 aldo/keto reductase -
  RS401_RS09815 (RS401_09815) - 1911437..1912612 (+) 1176 WP_153576926.1 MFS transporter -
  RS401_RS09820 (RS401_09820) - 1912801..1913025 (-) 225 WP_000162601.1 hypothetical protein -
  RS401_RS09825 (RS401_09825) - 1913110..1913457 (-) 348 WP_000426313.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=887110 RS401_RS09795 WP_000648331.1 1908484..1908771(+) (abrB) [Bacillus sp. SI2]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=887110 RS401_RS09795 WP_000648331.1 1908484..1908771(+) (abrB) [Bacillus sp. SI2]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516