Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RS401_RS07880 Genome accession   NZ_CP135601
Coordinates   1514103..1514705 (-) Length   200 a.a.
NCBI ID   WP_000155594.1    Uniprot ID   Q81SS2
Organism   Bacillus sp. SI2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1509103..1519705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS401_RS07860 (RS401_07860) dnaD 1509429..1510136 (+) 708 WP_000728549.1 DNA replication protein DnaD -
  RS401_RS07865 (RS401_07865) nth 1510152..1510799 (+) 648 WP_000933025.1 endonuclease III -
  RS401_RS07870 (RS401_07870) - 1510803..1511321 (+) 519 WP_000442686.1 YpoC family protein -
  RS401_RS07875 (RS401_07875) - 1511344..1514037 (-) 2694 WP_242298020.1 PBP1A family penicillin-binding protein -
  RS401_RS07880 (RS401_07880) recU 1514103..1514705 (-) 603 WP_000155594.1 Holliday junction resolvase RecU Machinery gene
  RS401_RS07885 (RS401_07885) - 1514809..1515834 (+) 1026 WP_001989802.1 DUF2515 domain-containing protein -
  RS401_RS07890 (RS401_07890) - 1516101..1516277 (-) 177 WP_001982922.1 hypothetical protein -
  RS401_RS07895 (RS401_07895) - 1516363..1516605 (+) 243 WP_001252043.1 hypothetical protein -
  RS401_RS07900 (RS401_07900) - 1516621..1516965 (+) 345 WP_000872959.1 YppE family protein -
  RS401_RS07905 (RS401_07905) - 1516991..1517182 (-) 192 WP_000242663.1 YppF family protein -
  RS401_RS07910 (RS401_07910) - 1517360..1517839 (+) 480 WP_001989799.1 YppG family protein -
  RS401_RS07915 (RS401_07915) - 1517995..1518420 (+) 426 WP_000546265.1 CotD family spore coat protein -
  RS401_RS07920 (RS401_07920) - 1518477..1519031 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  RS401_RS07925 (RS401_07925) gpsB 1519129..1519467 (+) 339 WP_000622433.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.66 Da        Isoelectric Point: 9.5601

>NTDB_id=887109 RS401_RS07880 WP_000155594.1 1514103..1514705(-) (recU) [Bacillus sp. SI2]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIITFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=887109 RS401_RS07880 WP_000155594.1 1514103..1514705(-) (recU) [Bacillus sp. SI2]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACCTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAGGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTACATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81SS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625